Gene detail

Detailed information of evm.model.Ap2.1465 in Astrangia poculata

Genomic Location: Ap2:15448025...15450253
NR annotation: XP_020623872.1, E3 ubiquitin-protein ligase MARCH2-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5PQ35	E3 ubiquitin-protein ligase MARCHF2 OS=Xenopus laevis OX=8355 GN=marchf2 PE=2 SV=1
Q28EX7	E3 ubiquitin-protein ligase MARCHF2 OS=Xenopus tropicalis OX=8364 GN=marchf2 PE=2 SV=1
Q9P0N8	E3 ubiquitin-protein ligase MARCHF2 OS=Homo sapiens OX=9606 GN=MARCHF2 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001027 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12906 all species →	RINGv	RING-variant domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR011016 all species →	Domain	Zinc finger, RING-CH-type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46065 all species →	E3 UBIQUITIN-PROTEIN LIGASE MARCH 2/3 FAMILY MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0008270 all species →	Molecular Function	zinc ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.1465.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.