Gene detail

Detailed information of evm.model.Ap2.1488 in Astrangia poculata

Genomic Location: Ap2:15734362...15753377
NR annotation: CAH3141988.1, unnamed protein product [Pocillopora meandrina]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.1488

atgggagaagaagctaaaggagcaggaaaagacgttataaagcaaacgcagaagagctcgaacgagttgtacaagtacgtcgatttgaatggaggcgggaatcttgtggaagcttttaggagagctcaagcgacgaaagatttcaccgaagtcgatcaactcatcgagggttttcgcgaaaagtttttatacaacagaggtgctggaaaggacatcgatataggagagcttgttcagtggagaaaacagagccgtgtggatgaagaaccatccaaacgagataatgcttttgtttctttcttcacgaaatgttctagccgtgttgagaatactatcgaagctgttggaattgataattatgcgttatcagagaacactgccattacaacacggcctgtttactgggatatcaaccagcgtgcggctgtaggagaaaacattcttcacttgtgcttcctgaatgctactgaagttcactatgaaatcggcaggctgataataaaaaagtatccccaacttgtcaatgatatttatctcagtgatgagttttatggggaaagtaccctgcacatggcgatagtgaatgagaatcaagccatggttcatttcctttgtaagcatggtgctgacattcatgagcgagcctatggggctttcttttgcccagaggatcaacgaaaatcaagaaaagaccatcccagtaatgtggaaatcattcttagtgaagagaccaattatgaaagcaacacatactggggagaatatccactgtcatttgcggcaagccttggcttggaggatatggtacgatacttgttagctagaggggcgtgtcccaacaaaaaggatacaaatggcaacactgtcttacacatgatggttatacatgataagatggacatgtatgacctcatattggattatggctgtcactgtggtcagtgtgatagaaaaccactcacagatattgagaacaacttgaagttgacaccgctaacacttgctgccaaacttgctcggagagagatgtttgatcatattctcactcgtgaaagagaagtattttggcagtatggtgaagtgacatgtgctgcattctcactcaaagaacttgacacactgagttttgatggacacataaatgcaaactgtgcacttaacataatcacacatgaggagtcagtaccacacttggccctctttgatggaatcctcaacaatttgctcaaagagaagtggaatcatgcctgccgttataggttttatcagcttcttgccctgtacatattctttctcattgccttcagcattgctatactccttcgtcctcttgaggacctaggctgttgggacggaacaaaagacaatgcttctctgtccttcacatttgataattccactggaatctttacgctggttaatggcacagcttgtgatcattgctttcttctgaacacaattaaaaatgatactgctcaacaggttcgagctgcttttgaaatcttgacactgctgtttgcatttttatatatcattatcctgatccgagaggtgatcctccaggagggactcaaaactgttttctttgacttggtccacaatcctcttcggctccttttgacgctgtcttgtgtgttgttactgacctgcttagcagctcggttcacatgttcagatcacctggaagatcatctggctattgcagctcttataatggcctggccttactctcttacattttgcaggggttttgctctggttgggccattcgtggttatgatctatcaaatgttgaagaaagatttcctcattttctttgtcatttacatgatttttgtgattggattttcgcaagccatgttccttgtaatgatggggtatgatgacaatactgtccaagagaatcttttcacgcgctggttttctgcaggacttggactcatcgttctttctttaggagagtatgaggacttgtatgggcaggtggcaaacagtaactcgccattcaagattttgggtttgatcatgtttttcgtgtttttgatcctcggggctctgttgattgtcaacatgttgattgccatgatgggaaacacataccttttagtcgcagaaactaagaaggaatggacaagacagtgggcgcgaattgtgctggccacagagcgcatgctcacgccggagcagaggcttgcggcgcagaaaaagtattcccagagtctgggtactaatggggagagggcgctgatcatgagactgcggaatcacgaaaatcagcaacagagccaagtttccaacgatccaaagcagcaggcgaaagccaaaacgaagaactctataccttcgccaagaaaggattatgattggctggacacgagcatgtga

Transcript

evm.model.Ap2.1488

ATGGGAGAAGAAGCTAAAGGAGCAGGAAAAGACGTTATAAAGCAAACGCAGAAGAGCTCGAACGAGTTGTACAAGTACGTCGATTTGAATGGAGGCGGGAATCTTGTGGAAGCTTTTAGGAGAGCTCAAGCGACGAAAGATTTCACCGAAGTCGATCAACTCATCGAGGGTTTTCGCGAAAAGTTTTTATACAACAGAGGTGCTGGAAAGGACATCGATATAGGAGAGCTTGTTCAGTGGAGAAAACAGAGCCGTGTGGATGAAGAACCATCCAAACGAGATAATGCTTTTGTTTCTTTCTTCACGAAATGTTCTAGCCGTGTTGAGAATACTATCGAAGCTGTTGGAATTGATAATTATGCGTTATCAGAGAACACTGCCATTACAACACGGCCTGTTTACTGGGATATCAACCAGCGTGCGGCTGTAGGAGAAAACATTCTTCACTTGTGCTTCCTGAATGCTACTGAAGTTCACTATGAAATCGGCAGGCTGATAATAAAAAAGTATCCCCAACTTGTCAATGATATTTATCTCAGTGATGAGTTTTATGGGGAAAGTACCCTGCACATGGCGATAGTGAATGAGAATCAAGCCATGGTTCATTTCCTTTGTAAGCATGGTGCTGACATTCATGAGCGAGCCTATGGGGCTTTCTTTTGCCCAGAGGATCAACGAAAATCAAGAAAAGACCATCCCAGTAATGTGGAAATCATTCTTAGTGAAGAGACCAATTATGAAAGCAACACATACTGGGGAGAATATCCACTGTCATTTGCGGCAAGCCTTGGCTTGGAGGATATGGTACGATACTTGTTAGCTAGAGGGGCGTGTCCCAACAAAAAGGATACAAATGGCAACACTGTCTTACACATGATGGTTATACATGATAAGATGGACATGTATGACCTCATATTGGATTATGGCTGTCACTGTGGTCAGTGTGATAGAAAACCACTCACAGATATTGAGAACAACTTGAAGTTGACACCGCTAACACTTGCTGCCAAACTTGCTCGGAGAGAGATGTTTGATCATATTCTCACTCGTGAAAGAGAAGTATTTTGGCAGTATGGTGAAGTGACATGTGCTGCATTCTCACTCAAAGAACTTGACACACTGAGTTTTGATGGACACATAAATGCAAACTGTGCACTTAACATAATCACACATGAGGAGTCAGTACCACACTTGGCCCTCTTTGATGGAATCCTCAACAATTTGCTCAAAGAGAAGTGGAATCATGCCTGCCGTTATAGGTTTTATCAGCTTCTTGCCCTGTACATATTCTTTCTCATTGCCTTCAGCATTGCTATACTCCTTCGTCCTCTTGAGGACCTAGGCTGTTGGGACGGAACAAAAGACAATGCTTCTCTGTCCTTCACATTTGATAATTCCACTGGAATCTTTACGCTGGTTAATGGCACAGCTTGTGATCATTGCTTTCTTCTGAACACAATTAAAAATGATACTGCTCAACAGGTTCGAGCTGCTTTTGAAATCTTGACACTGCTGTTTGCATTTTTATATATCATTATCCTGATCCGAGAGGTGATCCTCCAGGAGGGACTCAAAACTGTTTTCTTTGACTTGGTCCACAATCCTCTTCGGCTCCTTTTGACGCTGTCTTGTGTGTTGTTACTGACCTGCTTAGCAGCTCGGTTCACATGTTCAGATCACCTGGAAGATCATCTGGCTATTGCAGCTCTTATAATGGCCTGGCCTTACTCTCTTACATTTTGCAGGGGTTTTGCTCTGGTTGGGCCATTCGTGGTTATGATCTATCAAATGTTGAAGAAAGATTTCCTCATTTTCTTTGTCATTTACATGATTTTTGTGATTGGATTTTCGCAAGCCATGTTCCTTGTAATGATGGGGTATGATGACAATACTGTCCAAGAGAATCTTTTCACGCGCTGGTTTTCTGCAGGACTTGGACTCATCGTTCTTTCTTTAGGAGAGTATGAGGACTTGTATGGGCAGGTGGCAAACAGTAACTCGCCATTCAAGATTTTGGGTTTGATCATGTTTTTCGTGTTTTTGATCCTCGGGGCTCTGTTGATTGTCAACATGTTGATTGCCATGATGGGAAACACATACCTTTTAGTCGCAGAAACTAAGAAGGAATGGACAAGACAGTGGGCGCGAATTGTGCTGGCCACAGAGCGCATGCTCACGCCGGAGCAGAGGCTTGCGGCGCAGAAAAAGTATTCCCAGAGTCTGGGTACTAATGGGGAGAGGGCGCTGATCATGAGACTGCGGAATCACGAAAATCAGCAACAGAGCCAAGTTTCCAACGATCCAAAGCAGCAGGCGAAAGCCAAAACGAAGAACTCTATACCTTCGCCAAGAAAGGATTATGATTGGCTGGACACGAGCATGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9JIP0	Transient receptor potential cation channel subfamily V member 5 OS=Rattus norvegicus OX=10116 GN=Trpv5 PE=1 SV=1
P69744	Transient receptor potential cation channel subfamily V member 5 OS=Mus musculus OX=10090 GN=Trpv5 PE=1 SV=2
Q9NQA5	Transient receptor potential cation channel subfamily V member 5 OS=Homo sapiens OX=9606 GN=TRPV5 PE=1 SV=3

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0009336 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan
PF00520 all species →	Ion_trans	Ion transport protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR024862 all species →	Family	Transient receptor potential cation channel subfamily V	Interproscan
IPR005821 all species →	Domain	Ion transport domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10582 all species →	TRANSIENT RECEPTOR POTENTIAL ION CHANNEL PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005216 all species →	Molecular Function	monoatomic ion channel activity	Interproscan
GO:0005262 all species →	Molecular Function	calcium channel activity	Interproscan
GO:0005886 all species →	Cellular Component	plasma membrane	Interproscan
GO:0005887 all species →	Cellular Component	plasma membrane	Interproscan
GO:0006811 all species →	Biological Process	monoatomic ion transport	Interproscan
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0098703 all species →	Biological Process	calcium ion import across plasma membrane	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K04974	TRPV5; transient receptor potential cation channel subfamily V member 5	-	Ion channels	ko04040	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.