Genomic Location: Ap2:16691455...16695665
NR annotation: XP_020623733.1, ubiquitin domain-containing protein 2-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap2.1563 |
| Transcript |
| evm.model.Ap2.1563 |
| Protein |
| evm.model.Ap2.1563 |
| UniProt accession | Description |
|---|---|
| Q5EAE3 | Ubiquitin domain-containing protein 2 OS=Bos taurus OX=9913 GN=UBTD2 PE=2 SV=1 |
| Q8WUN7 | Ubiquitin domain-containing protein 2 OS=Homo sapiens OX=9606 GN=UBTD2 PE=1 SV=2 |
| Q6PGH0 | Ubiquitin domain-containing protein 2 OS=Mus musculus OX=10090 GN=Ubtd2 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0008889 (this species only) · gene tree & orthology |
| Ubiquitin family | ULD|UBL|NEDD8 · all ubiquitin genes in this species |
| Ubiquitin family | ULD|UFD/UBQ|UBQ_Other · all ubiquitin genes in this species |
| Ubiquitin family | ULD|UFD/UBQ|UBQ_PIM · all ubiquitin genes in this species |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16455 all species → | UBD | Ubiquitin-binding domain | Domain | Interproscan |
| PF00240 all species → | ubiquitin | Ubiquitin family | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR032752 all species → | Domain | DC-UbP/UBTD2, N-terminal domain | Interproscan |
| IPR038169 all species → | Homologous_superfamily | DC-UbP/UBTD2, N-terminal domain superfamily | Interproscan |
| IPR000626 all species → | Domain | Ubiquitin-like domain | Interproscan |
| IPR029071 all species → | Homologous_superfamily | Ubiquitin-like domain superfamily | Interproscan |
| IPR039869 all species → | Family | Ubiquitin domain-containing protein 1/2 | Interproscan |
| IPR019956 all species → | Domain | Ubiquitin domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13609 all species → | UBIQUITIN DOMAIN CONTAINING 1 PROTEIN-RELATED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
evm.model.Ap2.1563.Transcript abundance of evm.model.Ap2.1563 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
