Detailed information of evm.model.Ap2.1601 in Astrangia poculata

Genomic Location: Ap2:17121513...17127038
NR annotation: KAJ7350211.1, 3'-5' exoribonuclease 1 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q7TMF23'-5' exoribonuclease 1 OS=Mus musculus OX=10090 GN=Eri1 PE=1 SV=2
Q5FVR43'-5' exoribonuclease 1 OS=Rattus norvegicus OX=10116 GN=Eri1 PE=2 SV=1
Q8IV483'-5' exoribonuclease 1 OS=Homo sapiens OX=9606 GN=ERI1 PE=1 SV=3
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001739 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00929
all species →		RNase_TExonucleaseFamilyInterproscan
PF02037
all species →		SAPSAP domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR003034
all species →		DomainSAP domainInterproscan
IPR047201
all species →		DomainERI-1-like, DEDDh 3'-5' exonuclease domainInterproscan
IPR012337
all species →		Homologous_superfamilyRibonuclease H-like superfamilyInterproscan
IPR036397
all species →		Homologous_superfamilyRibonuclease H superfamilyInterproscan
IPR013520
all species →		DomainExonuclease, RNase T/DNA polymerase IIIInterproscan
IPR036361
all species →		Homologous_superfamilySAP domain superfamilyInterproscan
IPR051274
all species →		Family3'-5' ExoribonucleaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23044
all species →		3'-5' EXONUCLEASE ERI1-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000175
all species →		Molecular Function3'-5'-RNA exonuclease activityInterproscan
GO:0003676
all species →		Molecular Functionnucleic acid bindingInterproscan
GO:0000467
all species →		Biological Processexonucleolytic trimming to generate mature 3'-end of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap2.1601.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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