Gene detail

Detailed information of evm.model.Ap2.1627 in Astrangia poculata

Genomic Location: Ap2:17359726...17370257
NR annotation: XP_020611790.1, isocitrate dehydrogenase [NAD] subunit beta, mitochondrial-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q68FX0	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Rattus norvegicus OX=10116 GN=Idh3B PE=2 SV=1
Q28479	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Macaca fascicularis OX=9541 GN=IDH3B PE=2 SV=2
O77784	Isocitrate dehydrogenase [NAD] subunit beta, mitochondrial OS=Bos taurus OX=9913 GN=IDH3B PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001155 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00180 all species →	Iso_dh	Isocitrate/isopropylmalate dehydrogenase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR004434 all species →	Family	Isocitrate dehydrogenase NAD-dependent	Interproscan
IPR019818 all species →	Conserved_site	Isocitrate/isopropylmalate dehydrogenase, conserved site	Interproscan
IPR024084 all species →	Domain	Isopropylmalate dehydrogenase-like domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11835 all species →	DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006099 all species →	Biological Process	tricarboxylic acid cycle	Interproscan
GO:0000287 all species →	Molecular Function	magnesium ion binding	Interproscan
GO:0016616 all species →	Molecular Function	oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor	Interproscan
GO:0051287 all species →	Molecular Function	NAD binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0006102 all species →	Biological Process	isocitrate metabolic process	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K00030	IDH3; isocitrate dehydrogenase (NAD+)	EC:1.1.1.41	Citrate cycle (TCA cycle)	ko00020	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.