Gene detail

Detailed information of evm.model.Ap2.1646 in Astrangia poculata

Genomic Location: Ap2:17617582...17648214
NR annotation: XP_020611512.1, myoferlin-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.1646

atggaaggtgcaggggaagccccaccccctccccctccacctgcccctgcagccccgacaccagccccagcacctcctccagaggtgactccacagcctgctgagagaccagtcactccagaacctcagcgtgaagcagaggctccatctaaagcttcgccatcaccacccaaacctaaggatgagaagccagagagtgcagagccaccagcaaatactgaaaaagcacaggaaaaaccaactggcactggagatttcttagcaagaagtgaagccaggaaaaagctacctgataaaaatcttgatttccaggtaagagtgaggattatagagggtcgtcagctggctggagctaacatcagccctgtggtccgtgttaccatagacaaccagacaaggcaaactaaggttatcaagtcaaccaacaagccattttatgatgaggtgtttttcttcaacttcaatgtaacaccacacaaactgtttgatgctcaggcattgtttgaggtatttaattccaagaaattaagagcaaatgcaatggtgggaagtttccagtgtgatgttggattcttctatgatgagccttctcatgctgttataaggaagtggattctgttatctgatcctgaggataaaatggctggagcaaagggttacttgaaagtgacagttatggttcttggacctggtgatgaggccccagtagtgactgtaagtgaagatcaagatgatcttgatgacattgaagataacttgatccagccaccaggaatgatgcttagaccagcggtttttgacctcagagtatttagagctgaagatattccacagagtaggttttttattattttattatgtggtgctgatatcatgatccagtctgtgcctgttgacgagagactttcgtacaaatttgcagctactgtaaaatacttccttctccttgacttattccttgcagtggactcagctgttggtgagataatcaaaaaatccttagttggtggtcagatgaaagagttggtcgatccatatttactgttttcatttgctggaaaagaagtcaaaacagagatacataaaaactgcgaccatcctgagttcaatcaagagctacatgtttcatttcagtttcctacaatggctgaaaagttgaagctgcagttatgggactgggataaactaagtggagatgattgcatcggaacctattatcttccaatgtctgagatatcaggacaaggagaagaaggttttttgccaaggtttggaccatgcttcatcaacttttatggctccacacgagaatattctgacctacctgatgaatacgaagatctcaatgatggcattggtgagggtgtggcatatcgtggtcgagttctgattgaacttgagacaaagcttgacactcaaccaacaaagctgatagaagatgttcttagtgatgacatcgtacgagtccagacatacctccgtcgccgtaaatacaagttattttcttgtttcctggaagccacaatggtcgcgtgcactgatggacccgttacttttgaaattagcataggtaactatggaaaccagctagacttgtcagtgccaccttcatcatcttcaacctcaccaacaaatgccatatttgatggcagctactattactttctgccgtggaatgatattaaaccgtgctgtaatgtcgatagccactgggaagacattgcctttagactggagccgctaaacattctcacacgaatatgtgaacaacttgaaattgacttggaaaatgttcagctggcgatctccgaaaatgcttccctgaccactgtcgcagttcaaatcatgaaaatgctggacacgttgatagaaagctgcagaaaaccacttcctcatgcaacagccaaaacccctggagtcaatgatctggacctcaaattaaaggagacaagagaaagtgagctgaaagttatcctcgaggaagccttaaaacttcgtgcaagcgcaacagacgtggaagaaaccattggtgctatagaggacttgttgaagaagctgcgtttacttgcaattgagcctcagaacagtatgcctgatgttgttatctggatgatgagtggagataagagaatagcatatcaccgaatccctgcgtatgatctgttgtactcaccacatgtggatgcgcgagggaagaattgcggaaaaacaatggatctgtttatgcagtaccctggcaagaagcagtttaacttagatgattacccagaagtccccgctcacgttcgtgtcatactgtggcttgggctcgagaaacaccaagaggcttggtccaaccgccaggagactgagggcgacttttgcgtatttgcagaaacgtatgaaaatatgatgagcgttcttggcaaatggactgctaaaggactccctcgtccagcctggtcaaacgctggtggaacgctaaagcttccaaaagattcgtttattccaccagatgggtggagttttgatggaaagtggtttgttaacccagagctaagtttagcgtatgagaaagacacaggttgcaagagttttctagaagacgtgtttgaaaacgaagagcgctttccaggaggaaactggaatgcttcctcggtgaattggacagacattcacgggaatgctaccacaagtaaggactcgttagttgctcctgaaggctgggaatggacttcagcttggagcgtggacacgaacagggcggtggatgaagacgggtgggaatacacagtagacaccagtgtggcgagctacgtggcggtagagaaaacttatcacatgtcaaggaggaggaggtgggttcgcagcagaaacctggtgaagagtacggagaaagaagataagggtcaggacaaagtagacacggaaggatgggaatacgctgctgtgttttcatccaagtttcatagcaaagcgcgcactcgggatttagtccgacgtcgaagatggcatcggaaaatggtgcaaactgatcccacagctcctgcggtgtttcagatatctgaagagggtaaaaagggtggaattatgatggtgccgcggatgttcatcacgtttgaaaaagcccacaagtaccagctgagagtttacttgttccaaggccgagacctgttgccatctgatcctgatggactgtcagatccctacgtgcgcgtatcgtttggcactcaaagccaggtatctgagatcattcaccgtaccctgtgcccgacctgggaccagacgcttatctttgaaaatgtttacatttacggcagtcctgaaatcaccgacgagtcaccaccaaatgttgtcttggaactgtttgatcaagatcctgtgggcaaagatgagttcatgggacgctgtgtggaatctcctgttgtaaaacttaaaggccagggcccccctgccccgaggctgttatgggaaccagtcaaaaagggaacggaagatgccggagagattctggttgcgtttgaactttacctggatgaaggaacggatctgccttactttccacccactaaagaaaacaagccatcgttgtacatcgtacccagtggaatcagacccgcggtacagcgcacggcaattgaggtgttgtgttggggtgttcgaaacatgaagaagtttcaactggccaacgtctcctcaccaagcatcgagttcgagtgcggaggtcacgtggtacaatcgtcggtgattaaaaacacgcagagaaatcctaactttgatgaaccaatcttcttctttgacacttatcttccaaaggaagaactctacactccaccgatgaacattaaagtgcgagataaccgttcgtttggccgtcgacccgttgttggagttcactgcatcaagtcactacagccctacaggtgtttaccgctggaccaggttgattatggtgaagacgaaggttggtattag

Transcript

evm.model.Ap2.1646

ATGGAAGGTGCAGGGGAAGCCCCACCCCCTCCCCCTCCACCTGCCCCTGCAGCCCCGACACCAGCCCCAGCACCTCCTCCAGAGGTGACTCCACAGCCTGCTGAGAGACCAGTCACTCCAGAACCTCAGCGTGAAGCAGAGGCTCCATCTAAAGCTTCGCCATCACCACCCAAACCTAAGGATGAGAAGCCAGAGAGTGCAGAGCCACCAGCAAATACTGAAAAAGCACAGGAAAAACCAACTGGCACTGGAGATTTCTTAGCAAGAAGTGAAGCCAGGAAAAAGCTACCTGATAAAAATCTTGATTTCCAGGTAAGAGTGAGGATTATAGAGGGTCGTCAGCTGGCTGGAGCTAACATCAGCCCTGTGGTCCGTGTTACCATAGACAACCAGACAAGGCAAACTAAGGTTATCAAGTCAACCAACAAGCCATTTTATGATGAGGTGTTTTTCTTCAACTTCAATGTAACACCACACAAACTGTTTGATGCTCAGGCATTGTTTGAGGTATTTAATTCCAAGAAATTAAGAGCAAATGCAATGGTGGGAAGTTTCCAGTGTGATGTTGGATTCTTCTATGATGAGCCTTCTCATGCTGTTATAAGGAAGTGGATTCTGTTATCTGATCCTGAGGATAAAATGGCTGGAGCAAAGGGTTACTTGAAAGTGACAGTTATGGTTCTTGGACCTGGTGATGAGGCCCCAGTAGTGACTGTAAGTGAAGATCAAGATGATCTTGATGACATTGAAGATAACTTGATCCAGCCACCAGGAATGATGCTTAGACCAGCGGTTTTTGACCTCAGAGTATTTAGAGCTGAAGATATTCCACAGAGTAGGTTTTTTATTATTTTATTATGTGGTGCTGATATCATGATCCAGTCTGTGCCTGTTGACGAGAGACTTTCGTACAAATTTGCAGCTACTGTAAAATACTTCCTTCTCCTTGACTTATTCCTTGCAGTGGACTCAGCTGTTGGTGAGATAATCAAAAAATCCTTAGTTGGTGGTCAGATGAAAGAGTTGGTCGATCCATATTTACTGTTTTCATTTGCTGGAAAAGAAGTCAAAACAGAGATACATAAAAACTGCGACCATCCTGAGTTCAATCAAGAGCTACATGTTTCATTTCAGTTTCCTACAATGGCTGAAAAGTTGAAGCTGCAGTTATGGGACTGGGATAAACTAAGTGGAGATGATTGCATCGGAACCTATTATCTTCCAATGTCTGAGATATCAGGACAAGGAGAAGAAGGTTTTTTGCCAAGGTTTGGACCATGCTTCATCAACTTTTATGGCTCCACACGAGAATATTCTGACCTACCTGATGAATACGAAGATCTCAATGATGGCATTGGTGAGGGTGTGGCATATCGTGGTCGAGTTCTGATTGAACTTGAGACAAAGCTTGACACTCAACCAACAAAGCTGATAGAAGATGTTCTTAGTGATGACATCGTACGAGTCCAGACATACCTCCGTCGCCGTAAATACAAGTTATTTTCTTGTTTCCTGGAAGCCACAATGGTCGCGTGCACTGATGGACCCGTTACTTTTGAAATTAGCATAGGTAACTATGGAAACCAGCTAGACTTGTCAGTGCCACCTTCATCATCTTCAACCTCACCAACAAATGCCATATTTGATGGCAGCTACTATTACTTTCTGCCGTGGAATGATATTAAACCGTGCTGTAATGTCGATAGCCACTGGGAAGACATTGCCTTTAGACTGGAGCCGCTAAACATTCTCACACGAATATGTGAACAACTTGAAATTGACTTGGAAAATGTTCAGCTGGCGATCTCCGAAAATGCTTCCCTGACCACTGTCGCAGTTCAAATCATGAAAATGCTGGACACGTTGATAGAAAGCTGCAGAAAACCACTTCCTCATGCAACAGCCAAAACCCCTGGAGTCAATGATCTGGACCTCAAATTAAAGGAGACAAGAGAAAGTGAGCTGAAAGTTATCCTCGAGGAAGCCTTAAAACTTCGTGCAAGCGCAACAGACGTGGAAGAAACCATTGGTGCTATAGAGGACTTGTTGAAGAAGCTGCGTTTACTTGCAATTGAGCCTCAGAACAGTATGCCTGATGTTGTTATCTGGATGATGAGTGGAGATAAGAGAATAGCATATCACCGAATCCCTGCGTATGATCTGTTGTACTCACCACATGTGGATGCGCGAGGGAAGAATTGCGGAAAAACAATGGATCTGTTTATGCAGTACCCTGGCAAGAAGCAGTTTAACTTAGATGATTACCCAGAAGTCCCCGCTCACGTTCGTGTCATACTGTGGCTTGGGCTCGAGAAACACCAAGAGGCTTGGTCCAACCGCCAGGAGACTGAGGGCGACTTTTGCGTATTTGCAGAAACGTATGAAAATATGATGAGCGTTCTTGGCAAATGGACTGCTAAAGGACTCCCTCGTCCAGCCTGGTCAAACGCTGGTGGAACGCTAAAGCTTCCAAAAGATTCGTTTATTCCACCAGATGGGTGGAGTTTTGATGGAAAGTGGTTTGTTAACCCAGAGCTAAGTTTAGCGTATGAGAAAGACACAGGTTGCAAGAGTTTTCTAGAAGACGTGTTTGAAAACGAAGAGCGCTTTCCAGGAGGAAACTGGAATGCTTCCTCGGTGAATTGGACAGACATTCACGGGAATGCTACCACAAGTAAGGACTCGTTAGTTGCTCCTGAAGGCTGGGAATGGACTTCAGCTTGGAGCGTGGACACGAACAGGGCGGTGGATGAAGACGGGTGGGAATACACAGTAGACACCAGTGTGGCGAGCTACGTGGCGGTAGAGAAAACTTATCACATGTCAAGGAGGAGGAGGTGGGTTCGCAGCAGAAACCTGGTGAAGAGTACGGAGAAAGAAGATAAGGGTCAGGACAAAGTAGACACGGAAGGATGGGAATACGCTGCTGTGTTTTCATCCAAGTTTCATAGCAAAGCGCGCACTCGGGATTTAGTCCGACGTCGAAGATGGCATCGGAAAATGGTGCAAACTGATCCCACAGCTCCTGCGGTGTTTCAGATATCTGAAGAGGGTAAAAAGGGTGGAATTATGATGGTGCCGCGGATGTTCATCACGTTTGAAAAAGCCCACAAGTACCAGCTGAGAGTTTACTTGTTCCAAGGCCGAGACCTGTTGCCATCTGATCCTGATGGACTGTCAGATCCCTACGTGCGCGTATCGTTTGGCACTCAAAGCCAGGTATCTGAGATCATTCACCGTACCCTGTGCCCGACCTGGGACCAGACGCTTATCTTTGAAAATGTTTACATTTACGGCAGTCCTGAAATCACCGACGAGTCACCACCAAATGTTGTCTTGGAACTGTTTGATCAAGATCCTGTGGGCAAAGATGAGTTCATGGGACGCTGTGTGGAATCTCCTGTTGTAAAACTTAAAGGCCAGGGCCCCCCTGCCCCGAGGCTGTTATGGGAACCAGTCAAAAAGGGAACGGAAGATGCCGGAGAGATTCTGGTTGCGTTTGAACTTTACCTGGATGAAGGAACGGATCTGCCTTACTTTCCACCCACTAAAGAAAACAAGCCATCGTTGTACATCGTACCCAGTGGAATCAGACCCGCGGTACAGCGCACGGCAATTGAGGTGTTGTGTTGGGGTGTTCGAAACATGAAGAAGTTTCAACTGGCCAACGTCTCCTCACCAAGCATCGAGTTCGAGTGCGGAGGTCACGTGGTACAATCGTCGGTGATTAAAAACACGCAGAGAAATCCTAACTTTGATGAACCAATCTTCTTCTTTGACACTTATCTTCCAAAGGAAGAACTCTACACTCCACCGATGAACATTAAAGTGCGAGATAACCGTTCGTTTGGCCGTCGACCCGTTGTTGGAGTTCACTGCATCAAGTCACTACAGCCCTACAGGTGTTTACCGCTGGACCAGGTTGATTATGGTGAAGACGAAGGTTGGTATTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NZM1	Myoferlin OS=Homo sapiens OX=9606 GN=MYOF PE=1 SV=1
B3DLH6	Myoferlin OS=Xenopus tropicalis OX=8364 GN=myof PE=2 SV=1
Q69ZN7	Myoferlin OS=Mus musculus OX=10090 GN=Myof PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000314 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF08165 all species →	FerA	FerA (NUC095) domain	Domain	Interproscan
PF08151 all species →	FerI	FerI (NUC094) domain	Domain	Interproscan
PF08150 all species →	FerB	FerB (NUC096) domain	Domain	Interproscan
PF00168 all species →	C2	C2 domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR012560 all species →	Domain	Ferlin A-domain	Interproscan
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR006614 all species →	Domain	Peroxin/Ferlin domain	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR037723 all species →	Domain	Ferlin, fourth C2 domain	Interproscan
IPR012968 all species →	Domain	FerIin domain	Interproscan
IPR012561 all species →	Domain	Ferlin B-domain	Interproscan
IPR037721 all species →	Family	Ferlin family	Interproscan
IPR037720 all species →	Domain	Ferlin, second C2 domain	Interproscan
IPR037722 all species →	Domain	Ferlin, third C2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12546 all species →	FER-1-LIKE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0007009 all species →	Biological Process	plasma membrane organization	Interproscan
GO:0061025 all species →	Biological Process	membrane fusion	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.1646.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.