Gene detail

Detailed information of evm.model.Ap2.1697 in Astrangia poculata

Genomic Location: Ap2:18281510...18302070
NR annotation: KAJ7336559.1, hypothetical protein OS493_011773 [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.1697

atggaatgtgtagaagcattaaatcaagagactggtataataacagacggagatggtaaatacgccaatccttctaaatgctcgtggcttatagattctcagaggccaaacagcactattaatttggattttgaagagtttgcaactgaatgtaactgggatcatttgtatatatatgatgggaaatctgttgaaagccccttgatagcagtaataagtgggctaataaaagatgggtcaatggacaagtactctgatgggccagttctgaagttacgggccaagtcaggggctgcctttctatatttttacagtgataaacattatgttgaagatggatttagaattaaatacagcatatcaaaggattgctcagccaaatgcagtttccatgggcattgtgacaaacatgaaaactgcgtgtgtgatgtaggatgggctggcttaaattgtgatattcaaacctgtatttctgagtgcgtcaatggatattgtgataacaccacaaggctgtgtgtctgtgagtctggattcacaggtgcttcatgcaatatcactggtgacagaggacactgggttcagcattcctcgaaagggcaagacttaatacagggtcgagcatctcatgcatcagctttgctgggtgactacatgtgggtgtttggaggcttttcattgaactcagagccctttgagaacctcatcagatatcacattccaagtgacagttgggaagtagtatcacctgctatcaactctagtaaaagtccatatcgccgttatggtcactctgccattgctcataattcatccctgtatgtgtttggtggtagaatagataaaaaagcaaccagtgagctatgggcctttgacacacggacactacattggaatttgttgtccagtcaagctgattcacctctgtctgttgctggacacacagcaactctggtgcactcccaaatgattgtcttgtttggttatggtccagagagaggctacacagacaaagttcaagaatatgacctggagactggaaagtggagtatatatgatgctcccacagacataattggaccaacatatggacatagcagtgtctatgatcctgtgcaagggctgatctacatccatggtggattcacttggcaaggctcaaaagatgaactgtctactgcattgatatcttatgatcccatcgcaagagtatggaaaacccttaaacgtagcagtgttcctcgctacctccattcagctgttttactgggtggtgtgatgcttgtgtttggtggtaattcacacaatggcacagtacagttacagtctggtttgccatgcttttctatggactttcttgcatacgacactgcctgtgatgagtggctgagaatgcctgagtcaggacttctgaaaggtgctgggcgatatggccacactgccttacaagtcaacagaactatgtatgtgtttggaggatttcaaggagttgttctcaatgatgtgttatcattcactccaggaccatgtgatttgattaaagataagggcacatgtcagatgcacttcaattcatctgactgtgtgtggaatgactccacttctttgtgccttggaccagagcgatgtgttcaaccacaaatctcagctgaagaaaaatgctttcaacttggaaagagttgtagaagttgtacatccagtttacatggctgctcgtggtgcgatggcctctgtgtcaagggaaaatgtcctggaaaacagaaaaaaatagattctcctgcaaaatgccccaagaaagtaaaggagagttgtccaggtcagtgcgaggagcgcttgtgccataatctgacctcttgtggggactgtacctctaaaaagcgttgtatgtggtgtgagtcacagaaacaatgtgtgtctacctttgcctatgctgttagttttccttttggacagtgccgcggctgggtccaggatcagtgtccagctgtgagatgttctgggatgaagacttgtgatgattgtcacaccctgcctgggtgtggctggtgtgatgacgggtcgaagactggtttgggacagtgtatggagggaggagatgatggtccgtttaccaaacaagcaaacgcttcattgaaccagtgcccagcagaccactggtactttatcgagtgtcctgcctgccagtgtaatggacacagcaaatgcatcaacaaaaacatctgtaaaaagtgtgagcaccatacagacggcccccactgtgaagactgtgcagctggttattttggagatgccaagaacggtggaacttgcaaaggtacagtcagcatccctgttccttgtcttgttccttgtggatag

Transcript

evm.model.Ap2.1697

ATGGAATGTGTAGAAGCATTAAATCAAGAGACTGGTATAATAACAGACGGAGATGGTAAATACGCCAATCCTTCTAAATGCTCGTGGCTTATAGATTCTCAGAGGCCAAACAGCACTATTAATTTGGATTTTGAAGAGTTTGCAACTGAATGTAACTGGGATCATTTGTATATATATGATGGGAAATCTGTTGAAAGCCCCTTGATAGCAGTAATAAGTGGGCTAATAAAAGATGGGTCAATGGACAAGTACTCTGATGGGCCAGTTCTGAAGTTACGGGCCAAGTCAGGGGCTGCCTTTCTATATTTTTACAGTGATAAACATTATGTTGAAGATGGATTTAGAATTAAATACAGCATATCAAAGGATTGCTCAGCCAAATGCAGTTTCCATGGGCATTGTGACAAACATGAAAACTGCGTGTGTGATGTAGGATGGGCTGGCTTAAATTGTGATATTCAAACCTGTATTTCTGAGTGCGTCAATGGATATTGTGATAACACCACAAGGCTGTGTGTCTGTGAGTCTGGATTCACAGGTGCTTCATGCAATATCACTGGTGACAGAGGACACTGGGTTCAGCATTCCTCGAAAGGGCAAGACTTAATACAGGGTCGAGCATCTCATGCATCAGCTTTGCTGGGTGACTACATGTGGGTGTTTGGAGGCTTTTCATTGAACTCAGAGCCCTTTGAGAACCTCATCAGATATCACATTCCAAGTGACAGTTGGGAAGTAGTATCACCTGCTATCAACTCTAGTAAAAGTCCATATCGCCGTTATGGTCACTCTGCCATTGCTCATAATTCATCCCTGTATGTGTTTGGTGGTAGAATAGATAAAAAAGCAACCAGTGAGCTATGGGCCTTTGACACACGGACACTACATTGGAATTTGTTGTCCAGTCAAGCTGATTCACCTCTGTCTGTTGCTGGACACACAGCAACTCTGGTGCACTCCCAAATGATTGTCTTGTTTGGTTATGGTCCAGAGAGAGGCTACACAGACAAAGTTCAAGAATATGACCTGGAGACTGGAAAGTGGAGTATATATGATGCTCCCACAGACATAATTGGACCAACATATGGACATAGCAGTGTCTATGATCCTGTGCAAGGGCTGATCTACATCCATGGTGGATTCACTTGGCAAGGCTCAAAAGATGAACTGTCTACTGCATTGATATCTTATGATCCCATCGCAAGAGTATGGAAAACCCTTAAACGTAGCAGTGTTCCTCGCTACCTCCATTCAGCTGTTTTACTGGGTGGTGTGATGCTTGTGTTTGGTGGTAATTCACACAATGGCACAGTACAGTTACAGTCTGGTTTGCCATGCTTTTCTATGGACTTTCTTGCATACGACACTGCCTGTGATGAGTGGCTGAGAATGCCTGAGTCAGGACTTCTGAAAGGTGCTGGGCGATATGGCCACACTGCCTTACAAGTCAACAGAACTATGTATGTGTTTGGAGGATTTCAAGGAGTTGTTCTCAATGATGTGTTATCATTCACTCCAGGACCATGTGATTTGATTAAAGATAAGGGCACATGTCAGATGCACTTCAATTCATCTGACTGTGTGTGGAATGACTCCACTTCTTTGTGCCTTGGACCAGAGCGATGTGTTCAACCACAAATCTCAGCTGAAGAAAAATGCTTTCAACTTGGAAAGAGTTGTAGAAGTTGTACATCCAGTTTACATGGCTGCTCGTGGTGCGATGGCCTCTGTGTCAAGGGAAAATGTCCTGGAAAACAGAAAAAAATAGATTCTCCTGCAAAATGCCCCAAGAAAGTAAAGGAGAGTTGTCCAGGTCAGTGCGAGGAGCGCTTGTGCCATAATCTGACCTCTTGTGGGGACTGTACCTCTAAAAAGCGTTGTATGTGGTGTGAGTCACAGAAACAATGTGTGTCTACCTTTGCCTATGCTGTTAGTTTTCCTTTTGGACAGTGCCGCGGCTGGGTCCAGGATCAGTGTCCAGCTGTGAGATGTTCTGGGATGAAGACTTGTGATGATTGTCACACCCTGCCTGGGTGTGGCTGGTGTGATGACGGGTCGAAGACTGGTTTGGGACAGTGTATGGAGGGAGGAGATGATGGTCCGTTTACCAAACAAGCAAACGCTTCATTGAACCAGTGCCCAGCAGACCACTGGTACTTTATCGAGTGTCCTGCCTGCCAGTGTAATGGACACAGCAAATGCATCAACAAAAACATCTGTAAAAAGTGTGAGCACCATACAGACGGCCCCCACTGTGAAGACTGTGCAGCTGGTTATTTTGGAGATGCCAAGAACGGTGGAACTTGCAAAGGTACAGTCAGCATCCCTGTTCCTTGTCTTGTTCCTTGTGGATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9WU60	Attractin OS=Mus musculus OX=10090 GN=Atrn PE=1 SV=3
O75882	Attractin OS=Homo sapiens OX=9606 GN=ATRN PE=1 SV=2
Q99J86	Attractin OS=Rattus norvegicus OX=10116 GN=Atrn PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002032 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13854 all species →	Kelch_5	Kelch motif	Repeat	Interproscan
PF13415 all species →	Kelch_3	Galactose oxidase, central domain	Repeat	Interproscan
PF01437 all species →	PSI	Plexin repeat	Family	Interproscan
PF00431 all species →	CUB	CUB domain	Domain	Interproscan
PF13418 all species →	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR002165 all species →	Repeat	Plexin repeat	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan
IPR002049 all species →	Domain	Laminin-type EGF domain	Interproscan
IPR000859 all species →	Domain	CUB domain	Interproscan
IPR016201 all species →	Domain	PSI domain	Interproscan
IPR051568 all species →	Family	LZTR1/Attractin	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46376 all species →	LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.1697.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.