Gene detail

Detailed information of evm.model.Ap2.1700 in Astrangia poculata

Genomic Location: Ap2:18352356...18405932
NR annotation: XP_020607071.1, protein RRP5 homolog [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.1700

atggcgaccaagacagtccgcagcaaaagcggtgctaaacatggtacaccgagcgtgtttcagtcaaaacgagttgaggaggaagattttccgcgaggtggtgcttctgctctcagtccgcttgaagtgaggaagatcaagagtgaggctgagaaggacgttctctttgggaagtcatcatctgatttggaatcaaactcagcaagtgtaaagaaaaaagagaaacaaaagaagactactacaggaaatgagttggatggcaaagttgaattagaagggaaatcaaaacttaaacatgtggagcctctcacattcaagaaactctatgtggggatgaaagtattaggagcaatccgggaagtgaatgaatatgacatgatcatcagtctaccaaatggactaagtggatttgttcacattacccatataaatgagaagatcactgaaagattgaaggaagtgttacaggctgatgacagtaaagatgatgagacaaccagttttccggagcttgccaaattcttcacggttgggtcattagtgcagtgttcaatcttggaactggaaggttcaaaacccaaacaaaagaaggtcaaattatctttggatcctaaagatgttaacagtggcctcagcaagtcatctctgaagcaagggatggtccttccaggttatgtgactagtgttgaagaccatgggtacctcatatcatttggcattgacaacacaagtgcttttttaccaaagagcaaacttaatagagagtttgaagaagggcatcccttgtgcttgttggttaagtctgtggctgaggaacagaggattataacagttagtgctgatgaagatttgattcaagatgcactgatcaaagaagatatgaagttaaagttctcagcacttcttcctggcatgctggttaaggcgtctgtaactcaggtaacaaataatggtctaatcctgaatttccttggaggatttgaaggatctgcagacattcttcatcttccaaattgtggtgtagatgcacaaggcttagaagaaacctatccaaagaaggcaaaggttaaatgtcgtctgttgtatatgaatgtgaatactaagacagtaggactaagccttcaagagaatgttgttctcaataaagctgccagctttggtcactggtctgttggagatgtgattgatgatgctgcagttgtcagagtggatcagggactgggtctagtattgagattgtctgacggtattcttggatttactcatatttctagagtgtcagatgaacatgtggagaaactaggaaagaaatacaaagttggaagcacccataggtctgtcattgagcagccattcttgcgctatcatgacatcaagcctggaactttgatcaagggcaagataataactttggaaaagtttggaatgctcatttctgtatcagaccacatcagaggcttgtgcactacacttcacttagcagatattaaccttcaacatccagagaagaaattaaaagaaggaaaagttgtaaaatgcagggttctttctgttgagcctggtcgtcgcagaatgctgctcactcataagaagacactggtagagtctgcgcttcctcacatcacagaattcagtgatgctaagccaggagtcagctctcatggtttcattactgccatcaaagagtttggctgccttgtgacattctacaataatgtcaaaggactggtgcctctatcagaacttgggattccagctgatagtgatccgcgcagtgctttctacattggacaagtgatgttgtgtcatgtgctgagctgtcagcctgatcaggccaagtgtaggctctcatttaagacaagctccaggcctggtccatctttggaggatgacaaagttgtaggagctttactagaagctgatgtggtgagcagtaccgctgagggcctggatgttttacttcatcccagtggtgcaccagcatttcttccagtttctcatttgtctgatcatctgagtcactgccaggctcttctctctgtgtacaaaccctcaacgagactggcaaatgttgtttattatggcaagagcaaggacaagtccattacggtctctttgaaaccttcccttttaaaagcagcattagaaaagagtcttcttaacaactttaaggacctggaggtggggatgatcctgccaggttttgtcaagaaggtgatgagttatggaatattcattgaattctctacaggaatttttggccttgctccaaactcttttctagctgatcagtttgtgtccgaacctgcatcacactttcagacaggacggacagtcatggcaaaggtgactgaaattgacgtggagagacagaggtttcttgttagcctcaaaatgtccgactgttgcccagctcagagtgttgaaggaagctcattacctggtgtggaggtgttggaaaactatctctcagagagacggaaaattatccaacatctagcatctagttcagaggagatgaaggtgctgaactccttgaatccaggaacatgtgtcgaagcaaaggtccttcacgtaaaattccaaggcatcgtgttgcagcttgcagagggtgtgcagggatttgttcctcaccagcttgcgaaaggagtgagctgtgagccaggggaggtggtgtttggatgtgtgttagactggaatttcgacaagaaactgttgttagtgtcactgaatccagagctagtagcagagaggaaggctgtggatacccacaaaggaaaacaaaagaaggtgaaaagtgggcgcattcttgacgcttgtgttcagcttattacagataactacatggtggttatgcttccacaacataactacaggctggcatatgctcctactaaactgcatttgaatgacatcagagatgcatcaaagcgatttgctgtgggacaacaatattcttcagtcgtacaaagaccaggcaatttggaagacggtctcttaccagtggtgactcttcaagaaaaacacattgaaaaggaaaatatcatacctggagctgttaccacggcacaggttaagtcaatcaaggatcttcagatgaacgtgaacttgtgcggtggcaaatttcacggaagagttcacgtgacacaaatttgtgatgacgtaatagagggagagtcaccactgatagccttccacaatggagacaaggttcaagtcaaaattcttggatttcgcgacactaagacacacaagtttttaccaataacgcacagaaatttcaccaaggcggttgctgagcttaccatgaaaccaagtgagttgtcagcaaacagcaccgaacaacaaaatgtctcgactgacaccagtgatggcaacgagattgacaagaaacttgtggagtacaaagttggcgaagaagttaattgctttgtaaagtcggccacggaacattgtgtgtggatgatggctagtccttctgtcaatgggagagttgtactgttacacgcctcgactgatttgcaggtgttgaagtcgttgaagactcacttcaagcctggtgatggatacagatgtgtcgtgttgagcatcgacaaagaaagaagtttgctggatctttcgctgactgtcaaagcagattctgccatcgaggctgaccaggttttgacaggccaggttaccaagattcttcccgaccaaggactcctcgtccggctgcccatgtacaaatgtggcctggtcgctctgacggacctcagagacagctatatggaaaatcctttggaaagttttcaagtcatgcagcttgtaaggtgctacgttttgtcaacaaaggaaaaagaccactttgatctgtcacttagaccttcaaggaccgaagcagtgtcaacagtgaatgaggaagttgcaggagccgataagctagaccgcgagattaaaagcttggatgagttgaaagaaggaaagatcgttcgaggctatgtgaagcgctgctccgactttggtgtttttgtcagcctcgcacatcacattgttgcccgggtacaaataaagaacctttcgcagtattatgtgaagcagtggaaaccgttgttccctcagggaaaactagtgaaaggcaaagtgctgagtgttgacccaaccaaaggtcacgtggaattgtccctgaagggaacagatgttgggggacccgaccctgctccaaaaccgaaacggttggaggaaaaagagaagcgagacaaggaaagaaaagaacagaaaaggaaaagaaagaaggcgaacgatagcgaaacaaaggatgaatcagacgatgaggcggaagaaatactaaaaaggctcaagacagattccgatcatgaggatagtccaggaagtgaaagcgaggaagaggacaaggaagccgaaagcagttcggatgaagagaaccatgacgccagtaagcacaaagcaaacggagtaccaagattacagctttccagtgggtttgactggagcgaggagggaaatatcggagagaagtcgcagaacaacaagagagaacatgaagaggatgatgaaagcagcgagagtgaaacagaagccagctcacaggttgctcgtaagaagagcaaaaggcagaagagagcagcaaagaaagctgaagaagatttcttgtacaagacggaacagtcgcttttagaccaggaccgcgtacctgagactgctgaggactttgatcgtgtcgtgttatcatctcccaacaactcagtagtgtggttacagtacatggcgtaccaccttcacaccacagacatcgacaaggcacgggctgtggctgagagagcgctgaagacaatatcattcagggaagagcaggagaaactgaacgtgtgggtggccctaatgaacctggaaaacttgtacggcacccaagagtcccttgtgaaggtgtttgagcgagccctccaacagaatgaacccaagaaggtcttctttcaacttataggtatctacacgagaacggataagttagagttggccgaacagctgtaccagacaatgagtaagcgattcagtcagagcaaaaaggtgtgggtcggtttcggtgcgttctacatgaagcagggaaagctggacttgggcaggaaactgttgcaaagaagtctgaagagtctgccaaagagaaagcacgttgaaactattgtccagtttgctctgcacgagttcaggtatggcgagccgcagcgagggcagacgatgtttgagagcattctgaccaactatcccaagagaagcgatctgtggtcagtgtatctggatatgatgatcaaacaaggagatgtcgagcccgttagacaaatattcgagagagtgatccacatcaatctgtcttccaaaaagatgaagcttttcttcaagcggtacttggactttgaacggaagtatggcgacgcgttcagtgttgaaaatgtcaagaccaaggctatggaatatgttgaatccaaggcggcgctaagttaa

Transcript

evm.model.Ap2.1700

ATGGCGACCAAGACAGTCCGCAGCAAAAGCGGTGCTAAACATGGTACACCGAGCGTGTTTCAGTCAAAACGAGTTGAGGAGGAAGATTTTCCGCGAGGTGGTGCTTCTGCTCTCAGTCCGCTTGAAGTGAGGAAGATCAAGAGTGAGGCTGAGAAGGACGTTCTCTTTGGGAAGTCATCATCTGATTTGGAATCAAACTCAGCAAGTGTAAAGAAAAAAGAGAAACAAAAGAAGACTACTACAGGAAATGAGTTGGATGGCAAAGTTGAATTAGAAGGGAAATCAAAACTTAAACATGTGGAGCCTCTCACATTCAAGAAACTCTATGTGGGGATGAAAGTATTAGGAGCAATCCGGGAAGTGAATGAATATGACATGATCATCAGTCTACCAAATGGACTAAGTGGATTTGTTCACATTACCCATATAAATGAGAAGATCACTGAAAGATTGAAGGAAGTGTTACAGGCTGATGACAGTAAAGATGATGAGACAACCAGTTTTCCGGAGCTTGCCAAATTCTTCACGGTTGGGTCATTAGTGCAGTGTTCAATCTTGGAACTGGAAGGTTCAAAACCCAAACAAAAGAAGGTCAAATTATCTTTGGATCCTAAAGATGTTAACAGTGGCCTCAGCAAGTCATCTCTGAAGCAAGGGATGGTCCTTCCAGGTTATGTGACTAGTGTTGAAGACCATGGGTACCTCATATCATTTGGCATTGACAACACAAGTGCTTTTTTACCAAAGAGCAAACTTAATAGAGAGTTTGAAGAAGGGCATCCCTTGTGCTTGTTGGTTAAGTCTGTGGCTGAGGAACAGAGGATTATAACAGTTAGTGCTGATGAAGATTTGATTCAAGATGCACTGATCAAAGAAGATATGAAGTTAAAGTTCTCAGCACTTCTTCCTGGCATGCTGGTTAAGGCGTCTGTAACTCAGGTAACAAATAATGGTCTAATCCTGAATTTCCTTGGAGGATTTGAAGGATCTGCAGACATTCTTCATCTTCCAAATTGTGGTGTAGATGCACAAGGCTTAGAAGAAACCTATCCAAAGAAGGCAAAGGTTAAATGTCGTCTGTTGTATATGAATGTGAATACTAAGACAGTAGGACTAAGCCTTCAAGAGAATGTTGTTCTCAATAAAGCTGCCAGCTTTGGTCACTGGTCTGTTGGAGATGTGATTGATGATGCTGCAGTTGTCAGAGTGGATCAGGGACTGGGTCTAGTATTGAGATTGTCTGACGGTATTCTTGGATTTACTCATATTTCTAGAGTGTCAGATGAACATGTGGAGAAACTAGGAAAGAAATACAAAGTTGGAAGCACCCATAGGTCTGTCATTGAGCAGCCATTCTTGCGCTATCATGACATCAAGCCTGGAACTTTGATCAAGGGCAAGATAATAACTTTGGAAAAGTTTGGAATGCTCATTTCTGTATCAGACCACATCAGAGGCTTGTGCACTACACTTCACTTAGCAGATATTAACCTTCAACATCCAGAGAAGAAATTAAAAGAAGGAAAAGTTGTAAAATGCAGGGTTCTTTCTGTTGAGCCTGGTCGTCGCAGAATGCTGCTCACTCATAAGAAGACACTGGTAGAGTCTGCGCTTCCTCACATCACAGAATTCAGTGATGCTAAGCCAGGAGTCAGCTCTCATGGTTTCATTACTGCCATCAAAGAGTTTGGCTGCCTTGTGACATTCTACAATAATGTCAAAGGACTGGTGCCTCTATCAGAACTTGGGATTCCAGCTGATAGTGATCCGCGCAGTGCTTTCTACATTGGACAAGTGATGTTGTGTCATGTGCTGAGCTGTCAGCCTGATCAGGCCAAGTGTAGGCTCTCATTTAAGACAAGCTCCAGGCCTGGTCCATCTTTGGAGGATGACAAAGTTGTAGGAGCTTTACTAGAAGCTGATGTGGTGAGCAGTACCGCTGAGGGCCTGGATGTTTTACTTCATCCCAGTGGTGCACCAGCATTTCTTCCAGTTTCTCATTTGTCTGATCATCTGAGTCACTGCCAGGCTCTTCTCTCTGTGTACAAACCCTCAACGAGACTGGCAAATGTTGTTTATTATGGCAAGAGCAAGGACAAGTCCATTACGGTCTCTTTGAAACCTTCCCTTTTAAAAGCAGCATTAGAAAAGAGTCTTCTTAACAACTTTAAGGACCTGGAGGTGGGGATGATCCTGCCAGGTTTTGTCAAGAAGGTGATGAGTTATGGAATATTCATTGAATTCTCTACAGGAATTTTTGGCCTTGCTCCAAACTCTTTTCTAGCTGATCAGTTTGTGTCCGAACCTGCATCACACTTTCAGACAGGACGGACAGTCATGGCAAAGGTGACTGAAATTGACGTGGAGAGACAGAGGTTTCTTGTTAGCCTCAAAATGTCCGACTGTTGCCCAGCTCAGAGTGTTGAAGGAAGCTCATTACCTGGTGTGGAGGTGTTGGAAAACTATCTCTCAGAGAGACGGAAAATTATCCAACATCTAGCATCTAGTTCAGAGGAGATGAAGGTGCTGAACTCCTTGAATCCAGGAACATGTGTCGAAGCAAAGGTCCTTCACGTAAAATTCCAAGGCATCGTGTTGCAGCTTGCAGAGGGTGTGCAGGGATTTGTTCCTCACCAGCTTGCGAAAGGAGTGAGCTGTGAGCCAGGGGAGGTGGTGTTTGGATGTGTGTTAGACTGGAATTTCGACAAGAAACTGTTGTTAGTGTCACTGAATCCAGAGCTAGTAGCAGAGAGGAAGGCTGTGGATACCCACAAAGGAAAACAAAAGAAGGTGAAAAGTGGGCGCATTCTTGACGCTTGTGTTCAGCTTATTACAGATAACTACATGGTGGTTATGCTTCCACAACATAACTACAGGCTGGCATATGCTCCTACTAAACTGCATTTGAATGACATCAGAGATGCATCAAAGCGATTTGCTGTGGGACAACAATATTCTTCAGTCGTACAAAGACCAGGCAATTTGGAAGACGGTCTCTTACCAGTGGTGACTCTTCAAGAAAAACACATTGAAAAGGAAAATATCATACCTGGAGCTGTTACCACGGCACAGGTTAAGTCAATCAAGGATCTTCAGATGAACGTGAACTTGTGCGGTGGCAAATTTCACGGAAGAGTTCACGTGACACAAATTTGTGATGACGTAATAGAGGGAGAGTCACCACTGATAGCCTTCCACAATGGAGACAAGGTTCAAGTCAAAATTCTTGGATTTCGCGACACTAAGACACACAAGTTTTTACCAATAACGCACAGAAATTTCACCAAGGCGGTTGCTGAGCTTACCATGAAACCAAGTGAGTTGTCAGCAAACAGCACCGAACAACAAAATGTCTCGACTGACACCAGTGATGGCAACGAGATTGACAAGAAACTTGTGGAGTACAAAGTTGGCGAAGAAGTTAATTGCTTTGTAAAGTCGGCCACGGAACATTGTGTGTGGATGATGGCTAGTCCTTCTGTCAATGGGAGAGTTGTACTGTTACACGCCTCGACTGATTTGCAGGTGTTGAAGTCGTTGAAGACTCACTTCAAGCCTGGTGATGGATACAGATGTGTCGTGTTGAGCATCGACAAAGAAAGAAGTTTGCTGGATCTTTCGCTGACTGTCAAAGCAGATTCTGCCATCGAGGCTGACCAGGTTTTGACAGGCCAGGTTACCAAGATTCTTCCCGACCAAGGACTCCTCGTCCGGCTGCCCATGTACAAATGTGGCCTGGTCGCTCTGACGGACCTCAGAGACAGCTATATGGAAAATCCTTTGGAAAGTTTTCAAGTCATGCAGCTTGTAAGGTGCTACGTTTTGTCAACAAAGGAAAAAGACCACTTTGATCTGTCACTTAGACCTTCAAGGACCGAAGCAGTGTCAACAGTGAATGAGGAAGTTGCAGGAGCCGATAAGCTAGACCGCGAGATTAAAAGCTTGGATGAGTTGAAAGAAGGAAAGATCGTTCGAGGCTATGTGAAGCGCTGCTCCGACTTTGGTGTTTTTGTCAGCCTCGCACATCACATTGTTGCCCGGGTACAAATAAAGAACCTTTCGCAGTATTATGTGAAGCAGTGGAAACCGTTGTTCCCTCAGGGAAAACTAGTGAAAGGCAAAGTGCTGAGTGTTGACCCAACCAAAGGTCACGTGGAATTGTCCCTGAAGGGAACAGATGTTGGGGGACCCGACCCTGCTCCAAAACCGAAACGGTTGGAGGAAAAAGAGAAGCGAGACAAGGAAAGAAAAGAACAGAAAAGGAAAAGAAAGAAGGCGAACGATAGCGAAACAAAGGATGAATCAGACGATGAGGCGGAAGAAATACTAAAAAGGCTCAAGACAGATTCCGATCATGAGGATAGTCCAGGAAGTGAAAGCGAGGAAGAGGACAAGGAAGCCGAAAGCAGTTCGGATGAAGAGAACCATGACGCCAGTAAGCACAAAGCAAACGGAGTACCAAGATTACAGCTTTCCAGTGGGTTTGACTGGAGCGAGGAGGGAAATATCGGAGAGAAGTCGCAGAACAACAAGAGAGAACATGAAGAGGATGATGAAAGCAGCGAGAGTGAAACAGAAGCCAGCTCACAGGTTGCTCGTAAGAAGAGCAAAAGGCAGAAGAGAGCAGCAAAGAAAGCTGAAGAAGATTTCTTGTACAAGACGGAACAGTCGCTTTTAGACCAGGACCGCGTACCTGAGACTGCTGAGGACTTTGATCGTGTCGTGTTATCATCTCCCAACAACTCAGTAGTGTGGTTACAGTACATGGCGTACCACCTTCACACCACAGACATCGACAAGGCACGGGCTGTGGCTGAGAGAGCGCTGAAGACAATATCATTCAGGGAAGAGCAGGAGAAACTGAACGTGTGGGTGGCCCTAATGAACCTGGAAAACTTGTACGGCACCCAAGAGTCCCTTGTGAAGGTGTTTGAGCGAGCCCTCCAACAGAATGAACCCAAGAAGGTCTTCTTTCAACTTATAGGTATCTACACGAGAACGGATAAGTTAGAGTTGGCCGAACAGCTGTACCAGACAATGAGTAAGCGATTCAGTCAGAGCAAAAAGGTGTGGGTCGGTTTCGGTGCGTTCTACATGAAGCAGGGAAAGCTGGACTTGGGCAGGAAACTGTTGCAAAGAAGTCTGAAGAGTCTGCCAAAGAGAAAGCACGTTGAAACTATTGTCCAGTTTGCTCTGCACGAGTTCAGGTATGGCGAGCCGCAGCGAGGGCAGACGATGTTTGAGAGCATTCTGACCAACTATCCCAAGAGAAGCGATCTGTGGTCAGTGTATCTGGATATGATGATCAAACAAGGAGATGTCGAGCCCGTTAGACAAATATTCGAGAGAGTGATCCACATCAATCTGTCTTCCAAAAAGATGAAGCTTTTCTTCAAGCGGTACTTGGACTTTGAACGGAAGTATGGCGACGCGTTCAGTGTTGAAAATGTCAAGACCAAGGCTATGGAATATGTTGAATCCAAGGCGGCGCTAAGTTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q14690	Protein RRP5 homolog OS=Homo sapiens OX=9606 GN=PDCD11 PE=1 SV=3
Q6NS46	Protein RRP5 homolog OS=Mus musculus OX=10090 GN=Pdcd11 PE=1 SV=2
A7MB10	Protein RRP5 homolog OS=Bos taurus OX=9913 GN=PDCD11 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003198 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF05843 all species →	Suf	Suppressor of forked protein (Suf)	Repeat	Interproscan
PF00575 all species →	S1	S1 RNA binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003107 all species →	Repeat	HAT (Half-A-TPR) repeat	Interproscan
IPR003029 all species →	Domain	S1 domain	Interproscan
IPR012340 all species →	Homologous_superfamily	Nucleic acid-binding, OB-fold	Interproscan
IPR008847 all species →	Domain	Suppressor of forked	Interproscan
IPR045209 all species →	Family	rRNA biogenesis protein Rrp5	Interproscan
IPR019734 all species →	Repeat	Tetratricopeptide repeat	Interproscan
IPR048058 all species →	Domain	rRNA biogenesis protein RRP5, S1 domain, eleventh repeat	Interproscan
IPR048059 all species →	Domain	rRNA biogenesis protein RRP5, S1 domain, first repeat	Interproscan
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23270 all species →	PROGRAMMED CELL DEATH PROTEIN 11 PRE-RRNA PROCESSING PROTEIN RRP5	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0006396 all species →	Biological Process	RNA processing	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005730 all species →	Cellular Component	nucleolus	Interproscan
GO:0006364 all species →	Biological Process	rRNA processing	Interproscan
GO:0032040 all species →	Cellular Component	small-subunit processome	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K14792	RRP5, PDCD11; rRNA biogenesis protein RRP5	-	Ribosome biogenesis	ko03009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.