Gene detail

Detailed information of evm.model.Ap2.1786 in Astrangia poculata

Genomic Location: Ap2:19109405...19121056
NR annotation: XP_020607087.1, tumor suppressor p53-binding protein 1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.1786

atggatttcagtcccgacgaactcgatgttagccctccttgctttttagtcgagaattcccaggccgatgaatcgcagcaacttggccgatctgatagcgatcaacatttagcgatactgaaacaactgccgatctttcgtgtggcgaccagagctgagtcttcagctgggaatacgacgaatgaattgtctttacctcgaaatcctgttgctgtgacttgtcctacgactgctggagagggtggcggaaaggaagaaggggatccaagtcgggaacaaggggatgggggacagcagggtggaggaagtgatagtagtggcggcggtgacgacggaggtggtgatggtggtggggatgatggtgggggtgggggtgggggtggtgaaggtggtggaggagatgctggtgggggtggtgatggtggcggtgatgatgatgacgatgagaacaatggccaggatcccagtacaaatgaagaagaatctcctcattcagaggaaccgtcgctgtcatcatcaagtgatgctattccaagcttgattcgcccagaaacagttgtcagtaatagcaatcagtttaaaggagagaaggttgtggtacaagtgtttcgagatgcacggttgtcgggtgcagatttcagtcatgagagtggtggaagtgtgcatgagtctcctggtagtggtgataattatagtcaggcttcaactggtattgtgggggaggggggagatgttgctgctgatgtgagtgaagcatctacagcccctatggaagaagagagaaagtcaactagctcctctagtgtaggacataaatctgaacaaggttcaactatcagcagcagtagttaccatggagatttgtcaagtctgtccacaaccagtggaggtagcctccaagtatccccagaagtgcgtaaacaccttcctcttcttccgctgcttcgtacccagtcaaccagtgacaccagcactagcagtgcaggtagtaaggaagaaaaggttcacagcaaaattactggttttaagttgttctcattatcagaggaagaagaaaatggtaaagaagaacctgaagtatgctcttcacaagaagacctgttcgcttcttctcaaggccaccaggaaaaggtgcacctaccacatcagtcagcagatgattctcacttcttgtctccacagcaccgatcaactccagtggacggacaaagccacagaggatctcaggaacatgctcacgagaaatcactttacaaacaagtccttactactaagcagcgcacctcgacaccagtcgagggtggtcacagtggatttcttcatacccctccctcccaggggacaccaattgataacattgcttttaaaagtttgcagttttctggagagccaagtgtcagagaaacatcatcatcgtcatcatcagataaggtggcaccgtcaccagaaacatacagttcaattccagctttggactcgtcttctcctacagctagtgatgaggagcaagcagaagggaagactagcaggaaagataagagtagtgacaaaggttcttctgaaagagatgatcaagtaaatgacagtattgttcaatcgagtgataatagattgagtgtagctcaagaacactcagaaatatcaagagctgcagcagcattagtgcagtcatttgatttgtcccaaagccaagaaagacaatcagaaaaaccagcatccctcaaacacaaagagacgccagatgatgatgaagtagtgttgcctcgctggcaacaacagcaacaacaagatgttctccagcaaggtagtgctgctgatgagaaaaagtcgacatcaaatacaagctcgtcacaggggtcatcccctgatgatcaatccaagggtgagtcccaacctcctcagatgcaagagtggcagtcagtcatcagtgtcctgggttccagcagttcaggctctcaaggcacaaaggcaaacccaaaagcacatgcatctaatgctgaccaagaacagtcagtacaagtagtggatgtgagctttctggagaattctgaagctgcacctcttgtttcaaaggcagaatcatgtcccaaggaagcatctcaaggagtccagttgtcactctccccctcgtctcttgttgtagatccttttggtggtggaaagggtgcagaggaaagccctgtgctaattcctggtcccacacagcctgacatgagcgaagatatgttccgtccagttgttacacaagaaagtagggaacagcaagctgttgcagataaaccagctgatcagccaatggaagaagagagaattgctgaagattcccaggacgtggcattcccattttcactacaccttacccagtcacaagcagatctggacagccaggcagcacctgaagccagtcagccaatggaagtaattcagcaggcagttaaggatcaagaacagcagaacgtggaagtaccgagtgatttacctgaaaatcctgcgataactcaccatccattacaaggcgaggaaaagaaagttgatgaggccgttgacaacgttcacgaaaaagaagttccccacccttctactgataaggtcactgttgtgacccctcctgaaaaactcgtcttggctgaagattccgggggaggtgctcctcctagagagggaagtgcacctgaggaacttccaaatgcgaaacagttgagcacgcctgaaaaagacgtcccgacaagaagaccggtagagccacggctgccagtagcaatattttcagaaacctcaagtgaatctggcataggagggttccacttttctcttccaaaggaaccactgagaccgttaatatccactaccccaccccccataaggcccgttcgtcaggacactccagactcagaggagaggagtagcagacgaagtattatcccggatgtagttctgcccgtggtaacggagacgcctggaatgtctagtcaagctccgccaagctcattggaacaaattagacccccgtccctcacggtctcgatgccgcgtctcggttcaccacaaagtgactcggaaagttcagaaccagtctttcacttcgagcctgcccttcctccggcttccacgacaccaggcacctcagctgatctccagcccagtgcccctgcacccccgcgatcaatattcagccgcgctcgtgaggccatcacgaaaagtaagaaaagagaagtagtaaacgacagcgacccgtttgcgtttactgctgaagatgaggcaccggaaccagtaagaaaaaagccaagacggggatctcctcggggaaagggatctccccgggaaactcgagggaaagagagaaggctgggaaaagaagttgaagacgataacaatgctaccactcgagaagcatctacaagcagaatagaagaaggtcctagcagagaggagcaagaactagcaaagcccagttctttgcaagaaagagccggcgctaaacgggcgcgccaagaaagcggcgaatcgtccgagagcgaggcatcagaagaacgctcaaagcgagctagaaaggaggaggacgaaccgaaacaacaggagactgcttcgtcagaggccgtgcactatcagcagatcacacacgagcgtattattaccacggtaacgactcaagtccaacgagtagttaccgtcagcatcgtggataaggagacgggaaatgttgtagaggttctgacttacgaagacgatggagatcagaaggtggaaagtaaggaggaggagaaggaacaagttcatgaatttcttgagtcttcaagtctcaatggctcacgtgtgacgctcacttcaaaaacgccaaaacggcaagaacaccaacagcaaagccgaagttctccgcgaatgaagaaagataaatcgcctgttgccacacggtccgcgtctaaatcagttgaaagggcttcttctaagccgactgcagtcacggagatctttgggaagagcggtgctgatagagactcggaagattcagggaaaggaaaaggcgacgaccctcagaacagggatgagcccacggttgaaattcctgcggttaccaggcagacaaccatgcctgttgtggaagaggaaactgatctcaaacgtacctcttcaagtgattcatctctgactccaggaactcgcgtgttggccaaatggctcgacaactacttctatccaggggtcatcactacaaagcagtataaaaacggaagatacttggtcacgtttgatgacggtgacaaacgaaggatcccgcgggaaaacctcatcatcaaggatttactgcccgcgggacaaagtgtcatggctcaaggtgatggcgaagacgactttttcgaggaaggagtcatcgtcggccattatcgagacggaaacgcacgcgggtacgagatacagacccagactggcgcgataagacggtacccgcggagtagagttattttagcagaacagcaagcagcggccattttatcgagtgagagttccttcaacgttaccagtggatccagcctcagcattggggtccaaagcttgagactgaggaaggatgggagtgggagtagcggggttagtctgccacacgacatcaccaagtcaggaagtacaagctctaaagacacgagtgagagttcaagtgatgagaaagcgcgcggaaggaatgtggctcgtgcctcgccacacgtcagcaatcctatgccccagtcgaaagctgcgtctgccagcacggatataacgccgaaatctacacacaagtcatcccataaattcaaggcgcaagcacgaagagcggggcataggattgctgaaagcgaatctagttctgacgagataaaccgtgccactgcgagtaaaagacgaccagttaaaagggggctgtcatcttcgtatggcgcaaaatcaccttcaaggcttgcaggcaaagagccattccaggtcccgacgcgacgctcgcctcgtaagcagacaagcggaagagaagacacgatagaatcatcatgtctgcctggaaacaggaatatatttgcggggttagcttttctagtgacgggtgtcaccagggacaaaaacgagcccgaggaatccgacagcgaatcggaaagaatcgagtttaatcgcgaccatctcaaacgccagatcgaggctggaggcggtgtcgtgctgacgtcatttactcaatcccagatctctggcgcggagtgcttccttatctcgcacactcaccagcggactcaaaagtatttccagtccctcgcttctggaattccttgtgtgtcgcacatgtggatcaatgactcttgcgcgtgtggtaagcttcttgactacaagagatatcttctcccggcgggggaaagcttggaattgggcgaaatcgtggaatgccgaccacggagaaacatcttaggcgatatgcgggtttatcttcacgggagccagcagtttaaagacacttggtccagcgtgctgctagctgcgggatgtaagatggtcaccaaacttccaagtcgcgttgattatcagtgcgatgtcgtcatctgcgaggataacaagcttcccgcgagtgttaaacacgccgctgatctactggggattcctatcgtttcactggagtggcttttacagtcacttattaacggtcgacaagttgattttgacggtcatccgaaatatgactatcgctacaagaatgtgtga

Transcript

evm.model.Ap2.1786

ATGGATTTCAGTCCCGACGAACTCGATGTTAGCCCTCCTTGCTTTTTAGTCGAGAATTCCCAGGCCGATGAATCGCAGCAACTTGGCCGATCTGATAGCGATCAACATTTAGCGATACTGAAACAACTGCCGATCTTTCGTGTGGCGACCAGAGCTGAGTCTTCAGCTGGGAATACGACGAATGAATTGTCTTTACCTCGAAATCCTGTTGCTGTGACTTGTCCTACGACTGCTGGAGAGGGTGGCGGAAAGGAAGAAGGGGATCCAAGTCGGGAACAAGGGGATGGGGGACAGCAGGGTGGAGGAAGTGATAGTAGTGGCGGCGGTGACGACGGAGGTGGTGATGGTGGTGGGGATGATGGTGGGGGTGGGGGTGGGGGTGGTGAAGGTGGTGGAGGAGATGCTGGTGGGGGTGGTGATGGTGGCGGTGATGATGATGACGATGAGAACAATGGCCAGGATCCCAGTACAAATGAAGAAGAATCTCCTCATTCAGAGGAACCGTCGCTGTCATCATCAAGTGATGCTATTCCAAGCTTGATTCGCCCAGAAACAGTTGTCAGTAATAGCAATCAGTTTAAAGGAGAGAAGGTTGTGGTACAAGTGTTTCGAGATGCACGGTTGTCGGGTGCAGATTTCAGTCATGAGAGTGGTGGAAGTGTGCATGAGTCTCCTGGTAGTGGTGATAATTATAGTCAGGCTTCAACTGGTATTGTGGGGGAGGGGGGAGATGTTGCTGCTGATGTGAGTGAAGCATCTACAGCCCCTATGGAAGAAGAGAGAAAGTCAACTAGCTCCTCTAGTGTAGGACATAAATCTGAACAAGGTTCAACTATCAGCAGCAGTAGTTACCATGGAGATTTGTCAAGTCTGTCCACAACCAGTGGAGGTAGCCTCCAAGTATCCCCAGAAGTGCGTAAACACCTTCCTCTTCTTCCGCTGCTTCGTACCCAGTCAACCAGTGACACCAGCACTAGCAGTGCAGGTAGTAAGGAAGAAAAGGTTCACAGCAAAATTACTGGTTTTAAGTTGTTCTCATTATCAGAGGAAGAAGAAAATGGTAAAGAAGAACCTGAAGTATGCTCTTCACAAGAAGACCTGTTCGCTTCTTCTCAAGGCCACCAGGAAAAGGTGCACCTACCACATCAGTCAGCAGATGATTCTCACTTCTTGTCTCCACAGCACCGATCAACTCCAGTGGACGGACAAAGCCACAGAGGATCTCAGGAACATGCTCACGAGAAATCACTTTACAAACAAGTCCTTACTACTAAGCAGCGCACCTCGACACCAGTCGAGGGTGGTCACAGTGGATTTCTTCATACCCCTCCCTCCCAGGGGACACCAATTGATAACATTGCTTTTAAAAGTTTGCAGTTTTCTGGAGAGCCAAGTGTCAGAGAAACATCATCATCGTCATCATCAGATAAGGTGGCACCGTCACCAGAAACATACAGTTCAATTCCAGCTTTGGACTCGTCTTCTCCTACAGCTAGTGATGAGGAGCAAGCAGAAGGGAAGACTAGCAGGAAAGATAAGAGTAGTGACAAAGGTTCTTCTGAAAGAGATGATCAAGTAAATGACAGTATTGTTCAATCGAGTGATAATAGATTGAGTGTAGCTCAAGAACACTCAGAAATATCAAGAGCTGCAGCAGCATTAGTGCAGTCATTTGATTTGTCCCAAAGCCAAGAAAGACAATCAGAAAAACCAGCATCCCTCAAACACAAAGAGACGCCAGATGATGATGAAGTAGTGTTGCCTCGCTGGCAACAACAGCAACAACAAGATGTTCTCCAGCAAGGTAGTGCTGCTGATGAGAAAAAGTCGACATCAAATACAAGCTCGTCACAGGGGTCATCCCCTGATGATCAATCCAAGGGTGAGTCCCAACCTCCTCAGATGCAAGAGTGGCAGTCAGTCATCAGTGTCCTGGGTTCCAGCAGTTCAGGCTCTCAAGGCACAAAGGCAAACCCAAAAGCACATGCATCTAATGCTGACCAAGAACAGTCAGTACAAGTAGTGGATGTGAGCTTTCTGGAGAATTCTGAAGCTGCACCTCTTGTTTCAAAGGCAGAATCATGTCCCAAGGAAGCATCTCAAGGAGTCCAGTTGTCACTCTCCCCCTCGTCTCTTGTTGTAGATCCTTTTGGTGGTGGAAAGGGTGCAGAGGAAAGCCCTGTGCTAATTCCTGGTCCCACACAGCCTGACATGAGCGAAGATATGTTCCGTCCAGTTGTTACACAAGAAAGTAGGGAACAGCAAGCTGTTGCAGATAAACCAGCTGATCAGCCAATGGAAGAAGAGAGAATTGCTGAAGATTCCCAGGACGTGGCATTCCCATTTTCACTACACCTTACCCAGTCACAAGCAGATCTGGACAGCCAGGCAGCACCTGAAGCCAGTCAGCCAATGGAAGTAATTCAGCAGGCAGTTAAGGATCAAGAACAGCAGAACGTGGAAGTACCGAGTGATTTACCTGAAAATCCTGCGATAACTCACCATCCATTACAAGGCGAGGAAAAGAAAGTTGATGAGGCCGTTGACAACGTTCACGAAAAAGAAGTTCCCCACCCTTCTACTGATAAGGTCACTGTTGTGACCCCTCCTGAAAAACTCGTCTTGGCTGAAGATTCCGGGGGAGGTGCTCCTCCTAGAGAGGGAAGTGCACCTGAGGAACTTCCAAATGCGAAACAGTTGAGCACGCCTGAAAAAGACGTCCCGACAAGAAGACCGGTAGAGCCACGGCTGCCAGTAGCAATATTTTCAGAAACCTCAAGTGAATCTGGCATAGGAGGGTTCCACTTTTCTCTTCCAAAGGAACCACTGAGACCGTTAATATCCACTACCCCACCCCCCATAAGGCCCGTTCGTCAGGACACTCCAGACTCAGAGGAGAGGAGTAGCAGACGAAGTATTATCCCGGATGTAGTTCTGCCCGTGGTAACGGAGACGCCTGGAATGTCTAGTCAAGCTCCGCCAAGCTCATTGGAACAAATTAGACCCCCGTCCCTCACGGTCTCGATGCCGCGTCTCGGTTCACCACAAAGTGACTCGGAAAGTTCAGAACCAGTCTTTCACTTCGAGCCTGCCCTTCCTCCGGCTTCCACGACACCAGGCACCTCAGCTGATCTCCAGCCCAGTGCCCCTGCACCCCCGCGATCAATATTCAGCCGCGCTCGTGAGGCCATCACGAAAAGTAAGAAAAGAGAAGTAGTAAACGACAGCGACCCGTTTGCGTTTACTGCTGAAGATGAGGCACCGGAACCAGTAAGAAAAAAGCCAAGACGGGGATCTCCTCGGGGAAAGGGATCTCCCCGGGAAACTCGAGGGAAAGAGAGAAGGCTGGGAAAAGAAGTTGAAGACGATAACAATGCTACCACTCGAGAAGCATCTACAAGCAGAATAGAAGAAGGTCCTAGCAGAGAGGAGCAAGAACTAGCAAAGCCCAGTTCTTTGCAAGAAAGAGCCGGCGCTAAACGGGCGCGCCAAGAAAGCGGCGAATCGTCCGAGAGCGAGGCATCAGAAGAACGCTCAAAGCGAGCTAGAAAGGAGGAGGACGAACCGAAACAACAGGAGACTGCTTCGTCAGAGGCCGTGCACTATCAGCAGATCACACACGAGCGTATTATTACCACGGTAACGACTCAAGTCCAACGAGTAGTTACCGTCAGCATCGTGGATAAGGAGACGGGAAATGTTGTAGAGGTTCTGACTTACGAAGACGATGGAGATCAGAAGGTGGAAAGTAAGGAGGAGGAGAAGGAACAAGTTCATGAATTTCTTGAGTCTTCAAGTCTCAATGGCTCACGTGTGACGCTCACTTCAAAAACGCCAAAACGGCAAGAACACCAACAGCAAAGCCGAAGTTCTCCGCGAATGAAGAAAGATAAATCGCCTGTTGCCACACGGTCCGCGTCTAAATCAGTTGAAAGGGCTTCTTCTAAGCCGACTGCAGTCACGGAGATCTTTGGGAAGAGCGGTGCTGATAGAGACTCGGAAGATTCAGGGAAAGGAAAAGGCGACGACCCTCAGAACAGGGATGAGCCCACGGTTGAAATTCCTGCGGTTACCAGGCAGACAACCATGCCTGTTGTGGAAGAGGAAACTGATCTCAAACGTACCTCTTCAAGTGATTCATCTCTGACTCCAGGAACTCGCGTGTTGGCCAAATGGCTCGACAACTACTTCTATCCAGGGGTCATCACTACAAAGCAGTATAAAAACGGAAGATACTTGGTCACGTTTGATGACGGTGACAAACGAAGGATCCCGCGGGAAAACCTCATCATCAAGGATTTACTGCCCGCGGGACAAAGTGTCATGGCTCAAGGTGATGGCGAAGACGACTTTTTCGAGGAAGGAGTCATCGTCGGCCATTATCGAGACGGAAACGCACGCGGGTACGAGATACAGACCCAGACTGGCGCGATAAGACGGTACCCGCGGAGTAGAGTTATTTTAGCAGAACAGCAAGCAGCGGCCATTTTATCGAGTGAGAGTTCCTTCAACGTTACCAGTGGATCCAGCCTCAGCATTGGGGTCCAAAGCTTGAGACTGAGGAAGGATGGGAGTGGGAGTAGCGGGGTTAGTCTGCCACACGACATCACCAAGTCAGGAAGTACAAGCTCTAAAGACACGAGTGAGAGTTCAAGTGATGAGAAAGCGCGCGGAAGGAATGTGGCTCGTGCCTCGCCACACGTCAGCAATCCTATGCCCCAGTCGAAAGCTGCGTCTGCCAGCACGGATATAACGCCGAAATCTACACACAAGTCATCCCATAAATTCAAGGCGCAAGCACGAAGAGCGGGGCATAGGATTGCTGAAAGCGAATCTAGTTCTGACGAGATAAACCGTGCCACTGCGAGTAAAAGACGACCAGTTAAAAGGGGGCTGTCATCTTCGTATGGCGCAAAATCACCTTCAAGGCTTGCAGGCAAAGAGCCATTCCAGGTCCCGACGCGACGCTCGCCTCGTAAGCAGACAAGCGGAAGAGAAGACACGATAGAATCATCATGTCTGCCTGGAAACAGGAATATATTTGCGGGGTTAGCTTTTCTAGTGACGGGTGTCACCAGGGACAAAAACGAGCCCGAGGAATCCGACAGCGAATCGGAAAGAATCGAGTTTAATCGCGACCATCTCAAACGCCAGATCGAGGCTGGAGGCGGTGTCGTGCTGACGTCATTTACTCAATCCCAGATCTCTGGCGCGGAGTGCTTCCTTATCTCGCACACTCACCAGCGGACTCAAAAGTATTTCCAGTCCCTCGCTTCTGGAATTCCTTGTGTGTCGCACATGTGGATCAATGACTCTTGCGCGTGTGGTAAGCTTCTTGACTACAAGAGATATCTTCTCCCGGCGGGGGAAAGCTTGGAATTGGGCGAAATCGTGGAATGCCGACCACGGAGAAACATCTTAGGCGATATGCGGGTTTATCTTCACGGGAGCCAGCAGTTTAAAGACACTTGGTCCAGCGTGCTGCTAGCTGCGGGATGTAAGATGGTCACCAAACTTCCAAGTCGCGTTGATTATCAGTGCGATGTCGTCATCTGCGAGGATAACAAGCTTCCCGCGAGTGTTAAACACGCCGCTGATCTACTGGGGATTCCTATCGTTTCACTGGAGTGGCTTTTACAGTCACTTATTAACGGTCGACAAGTTGATTTTGACGGTCATCCGAAATATGACTATCGCTACAAGAATGTGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P70399	TP53-binding protein 1 OS=Mus musculus OX=10090 GN=Tp53bp1 PE=1 SV=3
Q12888	TP53-binding protein 1 OS=Homo sapiens OX=9606 GN=TP53BP1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006394 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF16589 all species →	BRCT_2	BRCT domain, a BRCA1 C-terminus domain	Family	Interproscan
PF09038 all species →	53-BP1_Tudor	Tumour suppressor p53-binding protein-1 Tudor	Domain	Interproscan
PF18428 all species →	BRCT_3	BRCA1 C Terminus (BRCT) domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036420 all species →	Homologous_superfamily	BRCT domain superfamily	Interproscan
IPR001357 all species →	Domain	BRCT domain	Interproscan
IPR015125 all species →	Domain	Tumour suppressor p53-binding protein-1 Tudor domain	Interproscan
IPR047249 all species →	Domain	TP53-binding protein 1-like, first BRCT domain	Interproscan
IPR002999 all species →	Domain	Tudor domain	Interproscan
IPR047252 all species →	Family	TP53-binding protein 1-like	Interproscan
IPR047250 all species →	Domain	TP53-binding protein 1-like, second BRCT domain	Interproscan
IPR014722 all species →	Homologous_superfamily	Large ribosomal subunit protein uL2, domain 2	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15321 all species →	TUMOR SUPPRESSOR P53-BINDING PROTEIN 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000077 all species →	Biological Process	DNA damage checkpoint signaling	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0042393 all species →	Molecular Function	histone binding	Interproscan
GO:0045944 all species →	Biological Process	positive regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K20915	TP53BP1, P202; tumor suppressor p53-binding protein 1	-	NOD-like receptor signaling pathway	ko04621	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.