Genomic Location: Ap2:19806434...19819013
NR annotation: XP_022781611.1, nucleolar complex protein 3 homolog isoform X1 [Stylophora pistillata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap2.1838 |
| Transcript |
| evm.model.Ap2.1838 |
| Protein |
| evm.model.Ap2.1838 |
| UniProt accession | Description |
|---|---|
| Q6DRN3 | Nucleolar complex protein 3 homolog OS=Danio rerio OX=7955 GN=noc3l PE=2 SV=1 |
| Q8VI84 | Nucleolar complex protein 3 homolog OS=Mus musculus OX=10090 GN=Noc3l PE=2 SV=2 |
| Q5R952 | Nucleolar complex protein 3 homolog OS=Pongo abelii OX=9601 GN=NOC3L PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0003711 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03914 all species → | CBF | CBF/Mak21 family | Repeat | Interproscan |
| PF07540 all species → | NOC3p | Nucleolar complex-associated protein | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005612 all species → | Domain | CCAAT-binding factor | Interproscan |
| IPR011501 all species → | Domain | Nucleolar complex-associated protein 3, N-terminal | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR016903 all species → | Family | Nucleolar complex-associated protein 3 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR14428 all species → | NUCLEOLAR COMPLEX PROTEIN 3 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0003682 all species → | Molecular Function | chromatin binding | Interproscan |
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| GO:0006270 all species → | Biological Process | DNA replication initiation | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14834 | NOC3; nucleolar complex protein 3 | - | Ribosome biogenesis | ko03009 | deepkoala |
Transcript abundance of evm.model.Ap2.1838 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
