Gene detail

Detailed information of evm.model.Ap2.1890 in Astrangia poculata

Genomic Location: Ap2:20296527...20319995
NR annotation: XP_020619178.1, pentatricopeptide repeat domain-containing protein 3, mitochondrial-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.1890

atggcggccatgtgtggtcgatgtgcgcgaaaactacaacatcttcgcatagcttggaacagatcactaagatcactgtgcactgcatcttctaaatcatcatctgatgaagttgatgatgaaatttcaggggacattcggtcattatttacttctcccaagaaaagagatccaatggctgttctaaaagccctggcatcaactgtgcaacctaatcctaccttgccaaatccagagtttattgaagacaatttcttgctaccaagatcaaaggctttacagacggaatgtttactggccaagaagtcaggacaagaagctgctaagtatgtgatttcaaagtgtcctgggatttttccactcaggaatccaaaccctatgtgggaaacagaggaaataatcatggacattgcagatgttcaaactgaagatcacttgaaaagttttatcaaggcacaggatgccagaaatgctgtgcaggcttatgaaagactcatagaacaaggggttgaagtctcactggaaacacagaatgatttacttgatcttgctgctcaacatctgggaaatatgtctgcagaagaagctttggagcctgttgaggcaggatcaggctttttaactattgagccaaaagaagaaaaagcagacagtggtgatgaagaacaagatttggatttagtagatgaagagtatgttgttgatgagacgacaaatgaagaaattgcagacaattctggtggcatcctgtggataaaaggcaactatgctgagcaaatgtttgaaagtatgacaaccaaagatggcaggacatacgaggcaatggttcttggtttgttaaagcatagaagttatgctgaggcttatgagttgttcaaggaaatgaaagcaactggacaccaagcctctggaatgacgtacaacttgatgttcatggggatttcgagatcctttgatttgaaggacaaatgggagaaagcacagaatttggtcaaattcatgggtgaagaacctattgtccttcctaatctcaaaacattcaattctcttgtaaggatagcagtggtgagctctactgaagacaaaaccagtacacagcttgctctgggcctgataagagacatgctagctataggaatggagccatcattggagacttacaaccagttactacgggcagagtatctcccaggttgggaagaaaagaggagaccgaaagtaaatgaagaagagaaggcgaggtcgattgcaaatcctgcagttcttgatatggttatcacacatctagaattgctacccaagcttccacctttagaggatccagatgattctgtcttctttggcacagccatgagtgcggctcttctttgtgtggacgcacatatagcaacacgcatatacagcttgttaaagaaacagagcaacatagcttttcttggtgaaaaacaagctcctttttactcggcatttcttttgaccctagcaacggctgaagtcgcatttcccatattgtttgacttttacaaagaaattgttcctgagaaactaagacccaaagaccatgtttacactgccttgttcaacctggccagtagaaccaaaaacccaggaatagttccaaaactctacgatgatatgcgcatgaacagggtggcattgtcaacgactgtagcgacagctctgtttagagcccttagcgtagctgagaaatccgaggatctcaaggtgaacctagacataatgcttgatgttttgcgctggatgaagatcttcaatttggaggtttctcctttcattatcactcgtatcattcatatgtactgtttaaacggcaagcttcaggaggcctggagaactttggacatgtttgagaaaaagagagttccgccaagctactctgcactccttaacataatgatgcttgctgcggatagtatggatcagttcaaagtagtgagatgttttgaaatgtttggcaagtttggttacagcttgcaccagagaaagcgaaatcacttttatgatacagcgaacattcctctggctgagagaacacgtttggatgctctttttgaagacctaggcgttcttgacgaaagacgtagaaagtatcaaggagggtttaaaaataaatacgagacagaagaggtggattccaaaacgagcgatagcccatgggactcgtaa

Transcript

evm.model.Ap2.1890

ATGGCGGCCATGTGTGGTCGATGTGCGCGAAAACTACAACATCTTCGCATAGCTTGGAACAGATCACTAAGATCACTGTGCACTGCATCTTCTAAATCATCATCTGATGAAGTTGATGATGAAATTTCAGGGGACATTCGGTCATTATTTACTTCTCCCAAGAAAAGAGATCCAATGGCTGTTCTAAAAGCCCTGGCATCAACTGTGCAACCTAATCCTACCTTGCCAAATCCAGAGTTTATTGAAGACAATTTCTTGCTACCAAGATCAAAGGCTTTACAGACGGAATGTTTACTGGCCAAGAAGTCAGGACAAGAAGCTGCTAAGTATGTGATTTCAAAGTGTCCTGGGATTTTTCCACTCAGGAATCCAAACCCTATGTGGGAAACAGAGGAAATAATCATGGACATTGCAGATGTTCAAACTGAAGATCACTTGAAAAGTTTTATCAAGGCACAGGATGCCAGAAATGCTGTGCAGGCTTATGAAAGACTCATAGAACAAGGGGTTGAAGTCTCACTGGAAACACAGAATGATTTACTTGATCTTGCTGCTCAACATCTGGGAAATATGTCTGCAGAAGAAGCTTTGGAGCCTGTTGAGGCAGGATCAGGCTTTTTAACTATTGAGCCAAAAGAAGAAAAAGCAGACAGTGGTGATGAAGAACAAGATTTGGATTTAGTAGATGAAGAGTATGTTGTTGATGAGACGACAAATGAAGAAATTGCAGACAATTCTGGTGGCATCCTGTGGATAAAAGGCAACTATGCTGAGCAAATGTTTGAAAGTATGACAACCAAAGATGGCAGGACATACGAGGCAATGGTTCTTGGTTTGTTAAAGCATAGAAGTTATGCTGAGGCTTATGAGTTGTTCAAGGAAATGAAAGCAACTGGACACCAAGCCTCTGGAATGACGTACAACTTGATGTTCATGGGGATTTCGAGATCCTTTGATTTGAAGGACAAATGGGAGAAAGCACAGAATTTGGTCAAATTCATGGGTGAAGAACCTATTGTCCTTCCTAATCTCAAAACATTCAATTCTCTTGTAAGGATAGCAGTGGTGAGCTCTACTGAAGACAAAACCAGTACACAGCTTGCTCTGGGCCTGATAAGAGACATGCTAGCTATAGGAATGGAGCCATCATTGGAGACTTACAACCAGTTACTACGGGCAGAGTATCTCCCAGGTTGGGAAGAAAAGAGGAGACCGAAAGTAAATGAAGAAGAGAAGGCGAGGTCGATTGCAAATCCTGCAGTTCTTGATATGGTTATCACACATCTAGAATTGCTACCCAAGCTTCCACCTTTAGAGGATCCAGATGATTCTGTCTTCTTTGGCACAGCCATGAGTGCGGCTCTTCTTTGTGTGGACGCACATATAGCAACACGCATATACAGCTTGTTAAAGAAACAGAGCAACATAGCTTTTCTTGGTGAAAAACAAGCTCCTTTTTACTCGGCATTTCTTTTGACCCTAGCAACGGCTGAAGTCGCATTTCCCATATTGTTTGACTTTTACAAAGAAATTGTTCCTGAGAAACTAAGACCCAAAGACCATGTTTACACTGCCTTGTTCAACCTGGCCAGTAGAACCAAAAACCCAGGAATAGTTCCAAAACTCTACGATGATATGCGCATGAACAGGGTGGCATTGTCAACGACTGTAGCGACAGCTCTGTTTAGAGCCCTTAGCGTAGCTGAGAAATCCGAGGATCTCAAGGTGAACCTAGACATAATGCTTGATGTTTTGCGCTGGATGAAGATCTTCAATTTGGAGGTTTCTCCTTTCATTATCACTCGTATCATTCATATGTACTGTTTAAACGGCAAGCTTCAGGAGGCCTGGAGAACTTTGGACATGTTTGAGAAAAAGAGAGTTCCGCCAAGCTACTCTGCACTCCTTAACATAATGATGCTTGCTGCGGATAGTATGGATCAGTTCAAAGTAGTGAGATGTTTTGAAATGTTTGGCAAGTTTGGTTACAGCTTGCACCAGAGAAAGCGAAATCACTTTTATGATACAGCGAACATTCCTCTGGCTGAGAGAACACGTTTGGATGCTCTTTTTGAAGACCTAGGCGTTCTTGACGAAAGACGTAGAAAGTATCAAGGAGGGTTTAAAAATAAATACGAGACAGAAGAGGTGGATTCCAAAACGAGCGATAGCCCATGGGACTCGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5R8W8	Small ribosomal subunit protein mS39 OS=Pongo abelii OX=9601 GN=PTCD3 PE=2 SV=1
Q14C51	Small ribosomal subunit protein mS39 OS=Mus musculus OX=10090 GN=Ptcd3 PE=1 SV=2
Q2KI62	Small ribosomal subunit protein mS39 OS=Bos taurus OX=9913 GN=PTCD3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004283 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01535 all species →	PPR	PPR repeat	Repeat	Interproscan
PF13812 all species →	PPR_3	Pentatricopeptide repeat domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011990 all species →	Homologous_superfamily	Tetratricopeptide-like helical domain superfamily	Interproscan
IPR002885 all species →	Repeat	Pentatricopeptide repeat	Interproscan
IPR037387 all species →	Family	Pentatricopeptide repeat domain-containing protein 3	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16276 all species →	PENTATRICOPEPTIDE REPEAT DOMAIN-CONTAINING PROTEIN 3	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005739 all species →	Cellular Component	mitochondrion	Interproscan
GO:0019843 all species →	Molecular Function	rRNA binding	Interproscan
GO:0032543 all species →	Biological Process	mitochondrial translation	Interproscan
GO:0043024 all species →	Molecular Function	ribosomal small subunit binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.1890.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.