Detailed information of evm.model.Ap2.1919 in Astrangia poculata

Genomic Location: Ap2:20605471...20619590
NR annotation: XP_020619212.1, probable ATP-dependent RNA helicase DDX56 isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9NY93Probable ATP-dependent RNA helicase DDX56 OS=Homo sapiens OX=9606 GN=DDX56 PE=1 SV=1
Q3SZ40Probable ATP-dependent RNA helicase DDX56 OS=Bos taurus OX=9913 GN=DDX56 PE=2 SV=1
Q9D0R4Probable ATP-dependent RNA helicase DDX56 OS=Mus musculus OX=10090 GN=Ddx56 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005932 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00271
all species →		Helicase_CHelicase conserved C-terminal domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027417
all species →		Homologous_superfamilyP-loop containing nucleoside triphosphate hydrolaseInterproscan
IPR001650
all species →		DomainHelicase, C-terminal domain-likeInterproscan
IPR050079
all species →		FamilyDEAD box RNA helicaseInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR47959
all species →		ATP-DEPENDENT RNA HELICASE RHLE-RELATEDInterproscan

 Gene Ontology
No Gene Ontology signature was detected for evm.model.Ap2.1919. This gene does have a gene model — the search simply returned no hit.
Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap2.1919.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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