Gene detail

Detailed information of evm.model.Ap2.1926 in Astrangia poculata

Genomic Location: Ap2:20669408...20673585
NR annotation: XP_020619231.1, RING finger protein 37-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q925F4	RING finger protein 37 OS=Mus musculus OX=10090 GN=Ubox5 PE=1 SV=2
O94941	RING finger protein 37 OS=Homo sapiens OX=9606 GN=UBOX5 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008641 (this species only)
Ubiquitin family	E3\|E3 activity RING\|U-box · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04564 all species →	U-box	U-box domain	Domain	Interproscan
PF19318 all species →	DUF5918	Family of unknown function (DUF5918)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001841 all species →	Domain	Zinc finger, RING-type	Interproscan
IPR013083 all species →	Homologous_superfamily	Zinc finger, RING/FYVE/PHD-type	Interproscan
IPR003613 all species →	Domain	U-box domain	Interproscan
IPR039847 all species →	Family	RING finger protein 37	Interproscan
IPR045696 all species →	Domain	RING finger protein 37, N-terminal	Interproscan
IPR039925 all species →	Domain	RNF37, RING-Ubox	Interproscan
IPR017907 all species →	Conserved_site	Zinc finger, RING-type, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13492 all species →	RING FINGER PROTEIN 37	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004842 all species →	Molecular Function	ubiquitin-protein transferase activity	Interproscan
GO:0016567 all species →	Biological Process	protein ubiquitination	Interproscan
GO:0000209 all species →	Biological Process	protein polyubiquitination	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0031625 all species →	Molecular Function	ubiquitin protein ligase binding	Interproscan
GO:0034450 all species →	Molecular Function	ubiquitin-ubiquitin ligase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10600	UBOX5, UIP5; U-box domain-containing protein 5	-	Ubiquitin system	ko04121	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.