Gene detail

Detailed information of evm.model.Ap2.1961 in Astrangia poculata

Genomic Location: Ap2:21037507...21062303
NR annotation: XP_020610037.1, attractin-like protein 1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.1961

atgaatgcttggtggctttgttctgtaatcatactcacggaaagtattctttgtgaatcaagcaaatgtacacggaatcttgactgtatcaacggcgtttgtaatggtggatttttctgcgtttgcaacgcgaactggtggggcgacctatgtcagttctgccgtgaaaggcgtggagaatcagatagtaaacttgaaataacagaggggaaagacaaatactctttaccaaccaagtgtgcttggcttattgagacagatgaacccagaaataatagatctgtgatattgaaaataaatgcattctctggtccttgtggtaaaagaaggttgattatctatgatggcagctcagtccagtcaccacttcttgctattgttagtgacatccttacagctggaactagaataaaggctgaaccacttcttcaactgagagcaaattctggctcagcattcattgttctcacaggaaaagaagaggaatcaaaaggcaaagattgctggtttaatatcacttacagttttgaaaaggagtgctccataaactgtggcagtcatggcttatgtactaagcagtcaggtcaaatgtgtgagtgcgatggtgggtggacatccagtaattgtagcacaccaacctgccatgttgtgtgtgatgacaactcatgtgatgccgagacaaggaagtgtaactgtaccaatgggtttacaggagaatcttgtaacatctctgacaataggagttattggagctcacttgtagcaaataaccaagaccttttagatggtgttgcttctcatgcaatggcggtgattggaaattatttatggatgtttggtggattatctttatcaaaagggcccctggatacattagcaaggtatagcattaaagagaacatgtgggagattatccaagcttctagcaaaaaacatcaaggaccatcagcaagatatggacattcattagttgcatttgataattctttgatcctgtttggtggaacttgcaagaatggagttgtttctaatgagacatggacgttcaacacaacatcaagacagtggactctgttcaggaacactgtggacaaaccagtgggagtcacaggacacacagccactgttgttggaagtgacatgattgttttgtttgggtacagtccagaaaagggagttacaaacttaatccaggtgtttgggcttgaaaacaaggtgtggagaacagttcaaagtgcaccaagtaacataagaccaacattcggacacagcagtgtgcttcacccagacacagggcgtatctacgtacatggaggatacagaatgctaaacagcacctgtttcaaaacatcaagtgacacatttttctaccatcccaagagtaaaggatggcattttcagcattctagtagtgttccaaggtttcttcattctgcagttgttgttggtagcacgatgattgtgtttggtggtagaggggacagtggaatggtgtctcgacatctcatggtgtttgacattgagaacaataagtggaagcttccaagtgatcctgttgtaccaaagactgcatcacgctatggacactcagctgtagcagctaacagcatcatgtatgcctttggtgggtatcaaggacaaatgtttaactcgtttcttcaatatagtcttggagactgcatgtcatcaagctcttcacttaactgctttaagccagtccctccccctgctgcttttacaacactgttgtcaccgaatgacatttgtacatcacacaaccctcaagtggatcgctgccatttaagacagacgtgtaaagattgcttacgtgaagatgctaatgaagatactgatgatggttgcatgtggtgtgagtcacataaccagtgcgtgtctaaggcagcttatgaggtcacttttccgtacctacagtgcatgcagctactggaacgaggcactggaacatgttctgcttgtcagtgtaatggtcacagtaaatgcgtgaaggaaaacagctgtggagaatgcgaggataacactactggagcccactgtgaacagtgcgccaaaggattttatggagaccccaggaatggaggcaaatgtgaagcgtgtcagtgttctgaacatgctaaactctgtgctgctgatacaggcgattgtcagtgtcttactaagggagtcacaggtcgcaactgcgacgagtgtgactctggttactctggtaatgcagcttatggcggcagttgttactattcatttctcgtttcgttgacgccacaagaagttaacttgactggattcaagagttttaattttgagtattttcccaccatggaaaagcgcagtgtgcagttgtcgatcgaatggacggaagatagcctgggatctaaggcgtggctcaacctaacaactttctatgaagacaaccccgatgaaggagaggaagtgaggaacagtcgcgagctgattccattcgaggccgtgtttccttaccatgagtacgagtttggtcatgaagacaagtttggtttccgaggctatatttatgacattgatactggtggcaacagtgccgttctgaaagtgaccgtaactcaacagccagaaaccattgatcttctagaatttttcctcacgtttttcggctgtttcctatcgctgcttgtcatcgctggtgtcgtgtggaaagtgagaaatcgctacattacctttatcctgaatcggcaaagacgtgaggagagacagaagatggccagtcgtccatttgcaaaaacgtccgttctcctccattttcataacaagtcaaatcccggacccattgctgtggaaacctgtgaaaacaacaaagcggctgtccttacagttttaatgcaactgcctggggccgaggatggctttgctcctattggtcaaagtggtgtctgttttgcaagcgtgttagaaaccaacggggaccacgcagcgagtacccccttgggaaaagctacacgtataagaactaccaagcggtgtgcctcgacctgtgtatag

Transcript

evm.model.Ap2.1961

ATGAATGCTTGGTGGCTTTGTTCTGTAATCATACTCACGGAAAGTATTCTTTGTGAATCAAGCAAATGTACACGGAATCTTGACTGTATCAACGGCGTTTGTAATGGTGGATTTTTCTGCGTTTGCAACGCGAACTGGTGGGGCGACCTATGTCAGTTCTGCCGTGAAAGGCGTGGAGAATCAGATAGTAAACTTGAAATAACAGAGGGGAAAGACAAATACTCTTTACCAACCAAGTGTGCTTGGCTTATTGAGACAGATGAACCCAGAAATAATAGATCTGTGATATTGAAAATAAATGCATTCTCTGGTCCTTGTGGTAAAAGAAGGTTGATTATCTATGATGGCAGCTCAGTCCAGTCACCACTTCTTGCTATTGTTAGTGACATCCTTACAGCTGGAACTAGAATAAAGGCTGAACCACTTCTTCAACTGAGAGCAAATTCTGGCTCAGCATTCATTGTTCTCACAGGAAAAGAAGAGGAATCAAAAGGCAAAGATTGCTGGTTTAATATCACTTACAGTTTTGAAAAGGAGTGCTCCATAAACTGTGGCAGTCATGGCTTATGTACTAAGCAGTCAGGTCAAATGTGTGAGTGCGATGGTGGGTGGACATCCAGTAATTGTAGCACACCAACCTGCCATGTTGTGTGTGATGACAACTCATGTGATGCCGAGACAAGGAAGTGTAACTGTACCAATGGGTTTACAGGAGAATCTTGTAACATCTCTGACAATAGGAGTTATTGGAGCTCACTTGTAGCAAATAACCAAGACCTTTTAGATGGTGTTGCTTCTCATGCAATGGCGGTGATTGGAAATTATTTATGGATGTTTGGTGGATTATCTTTATCAAAAGGGCCCCTGGATACATTAGCAAGGTATAGCATTAAAGAGAACATGTGGGAGATTATCCAAGCTTCTAGCAAAAAACATCAAGGACCATCAGCAAGATATGGACATTCATTAGTTGCATTTGATAATTCTTTGATCCTGTTTGGTGGAACTTGCAAGAATGGAGTTGTTTCTAATGAGACATGGACGTTCAACACAACATCAAGACAGTGGACTCTGTTCAGGAACACTGTGGACAAACCAGTGGGAGTCACAGGACACACAGCCACTGTTGTTGGAAGTGACATGATTGTTTTGTTTGGGTACAGTCCAGAAAAGGGAGTTACAAACTTAATCCAGGTGTTTGGGCTTGAAAACAAGGTGTGGAGAACAGTTCAAAGTGCACCAAGTAACATAAGACCAACATTCGGACACAGCAGTGTGCTTCACCCAGACACAGGGCGTATCTACGTACATGGAGGATACAGAATGCTAAACAGCACCTGTTTCAAAACATCAAGTGACACATTTTTCTACCATCCCAAGAGTAAAGGATGGCATTTTCAGCATTCTAGTAGTGTTCCAAGGTTTCTTCATTCTGCAGTTGTTGTTGGTAGCACGATGATTGTGTTTGGTGGTAGAGGGGACAGTGGAATGGTGTCTCGACATCTCATGGTGTTTGACATTGAGAACAATAAGTGGAAGCTTCCAAGTGATCCTGTTGTACCAAAGACTGCATCACGCTATGGACACTCAGCTGTAGCAGCTAACAGCATCATGTATGCCTTTGGTGGGTATCAAGGACAAATGTTTAACTCGTTTCTTCAATATAGTCTTGGAGACTGCATGTCATCAAGCTCTTCACTTAACTGCTTTAAGCCAGTCCCTCCCCCTGCTGCTTTTACAACACTGTTGTCACCGAATGACATTTGTACATCACACAACCCTCAAGTGGATCGCTGCCATTTAAGACAGACGTGTAAAGATTGCTTACGTGAAGATGCTAATGAAGATACTGATGATGGTTGCATGTGGTGTGAGTCACATAACCAGTGCGTGTCTAAGGCAGCTTATGAGGTCACTTTTCCGTACCTACAGTGCATGCAGCTACTGGAACGAGGCACTGGAACATGTTCTGCTTGTCAGTGTAATGGTCACAGTAAATGCGTGAAGGAAAACAGCTGTGGAGAATGCGAGGATAACACTACTGGAGCCCACTGTGAACAGTGCGCCAAAGGATTTTATGGAGACCCCAGGAATGGAGGCAAATGTGAAGCGTGTCAGTGTTCTGAACATGCTAAACTCTGTGCTGCTGATACAGGCGATTGTCAGTGTCTTACTAAGGGAGTCACAGGTCGCAACTGCGACGAGTGTGACTCTGGTTACTCTGGTAATGCAGCTTATGGCGGCAGTTGTTACTATTCATTTCTCGTTTCGTTGACGCCACAAGAAGTTAACTTGACTGGATTCAAGAGTTTTAATTTTGAGTATTTTCCCACCATGGAAAAGCGCAGTGTGCAGTTGTCGATCGAATGGACGGAAGATAGCCTGGGATCTAAGGCGTGGCTCAACCTAACAACTTTCTATGAAGACAACCCCGATGAAGGAGAGGAAGTGAGGAACAGTCGCGAGCTGATTCCATTCGAGGCCGTGTTTCCTTACCATGAGTACGAGTTTGGTCATGAAGACAAGTTTGGTTTCCGAGGCTATATTTATGACATTGATACTGGTGGCAACAGTGCCGTTCTGAAAGTGACCGTAACTCAACAGCCAGAAACCATTGATCTTCTAGAATTTTTCCTCACGTTTTTCGGCTGTTTCCTATCGCTGCTTGTCATCGCTGGTGTCGTGTGGAAAGTGAGAAATCGCTACATTACCTTTATCCTGAATCGGCAAAGACGTGAGGAGAGACAGAAGATGGCCAGTCGTCCATTTGCAAAAACGTCCGTTCTCCTCCATTTTCATAACAAGTCAAATCCCGGACCCATTGCTGTGGAAACCTGTGAAAACAACAAAGCGGCTGTCCTTACAGTTTTAATGCAACTGCCTGGGGCCGAGGATGGCTTTGCTCCTATTGGTCAAAGTGGTGTCTGTTTTGCAAGCGTGTTAGAAACCAACGGGGACCACGCAGCGAGTACCCCCTTGGGAAAAGCTACACGTATAAGAACTACCAAGCGGTGTGCCTCGACCTGTGTATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q99J86	Attractin OS=Rattus norvegicus OX=10116 GN=Atrn PE=2 SV=1
Q9WU60	Attractin OS=Mus musculus OX=10090 GN=Atrn PE=1 SV=3
O75882	Attractin OS=Homo sapiens OX=9606 GN=ATRN PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002032 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00053 all species →	Laminin_EGF	Laminin EGF domain	Domain	Interproscan
PF13418 all species →	Kelch_4	Galactose oxidase, central domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR015915 all species →	Homologous_superfamily	Kelch-type beta propeller	Interproscan
IPR002049 all species →	Domain	Laminin-type EGF domain	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR051568 all species →	Family	LZTR1/Attractin	Interproscan
IPR035914 all species →	Homologous_superfamily	Spermadhesin, CUB domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR46376 all species →	LEUCINE-ZIPPER-LIKE TRANSCRIPTIONAL REGULATOR 1	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005794 all species →	Cellular Component	Golgi apparatus	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K24332	ATRN; attractin	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.