Detailed information of evm.model.Ap2.1970 in Astrangia poculata

Genomic Location: Ap2:21230159...21236805
NR annotation: KAJ7392393.1, E3 ubiquitin-protein transferase rmnd5a [Desmophyllum pertusum]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q640V2E3 ubiquitin-protein ligase RMND5A OS=Xenopus tropicalis OX=8364 GN=rmnd5a PE=2 SV=1
Q9H871E3 ubiquitin-protein transferase RMND5A OS=Homo sapiens OX=9606 GN=RMND5A PE=1 SV=1
Q80YQ8E3 ubiquitin-protein ligase RMND5A OS=Mus musculus OX=10090 GN=Rmnd5a PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0006710 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF13445
all species →		zf-RING_UBOXRING-type zinc-fingerDomainInterproscan
PF10607
all species →		CTLHCTLH/CRA C-terminal to LisH motif domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR027370
all species →		DomainZinc finger, RING-type, eukaryoticInterproscan
IPR013144
all species →		DomainCRA domainInterproscan
IPR024964
all species →		DomainCTLH/CRA C-terminal to LisH motif domainInterproscan
IPR044063
all species →		DomainGid-type RING finger domainInterproscan
IPR006595
all species →		DomainCTLH, C-terminal LisH motifInterproscan
IPR045098
all species →		FamilyFyv10 familyInterproscan
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12170
all species →		MACROPHAGE ERYTHROBLAST ATTACHER-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan
GO:0004842
all species →		Molecular Functionubiquitin-protein transferase activityInterproscan
GO:0005634
all species →		Cellular ComponentnucleusInterproscan
GO:0005737
all species →		Cellular ComponentcytoplasmInterproscan
GO:0034657
all species →		Cellular ComponentGID complexInterproscan
GO:0043161
all species →		Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
KOEnzymeEnzyme IDPathwayMap IDSource
K23333RMND5; E3 ubiquitin-protein transferase RMND5EC:2.3.2.27
Ubiquitin systemko04121deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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