Detailed information of evm.model.Ap2.1980 in Astrangia poculata

Genomic Location: Ap2:21339815...21346979
NR annotation: KAJ7392403.1, Polycomb group RING finger protein 5 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
B3DK16Polycomb group RING finger protein 5-A OS=Danio rerio OX=7955 GN=pcgf5a PE=2 SV=1
Q1JPS1Polycomb group RING finger protein 5-B OS=Danio rerio OX=7955 GN=pcgf5b PE=2 SV=1
Q3UK78Polycomb group RING finger protein 5 OS=Mus musculus OX=10090 GN=Pcgf5 PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000402 (this species only)
Ubiquitin familyULD|UFD|RAWUL · all ubiquitin genes in this species
Ubiquitin familyE3|E3 activity RING|RING · all ubiquitin genes in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF16207
all species →		RAWULRAWUL domain RING finger- and WD40-associated ubiquitin-likeDomainInterproscan
PF13923
all species →		zf-C3HC4_2Zinc finger, C3HC4 type (RING finger)DomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR013083
all species →		Homologous_superfamilyZinc finger, RING/FYVE/PHD-typeInterproscan
IPR017907
all species →		Conserved_siteZinc finger, RING-type, conserved siteInterproscan
IPR051507
all species →		FamilyPolycomb group RING fingerInterproscan
IPR001841
all species →		DomainZinc finger, RING-typeInterproscan
IPR032443
all species →		DomainRAWUL domainInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR45893
all species →		POLYCOMB GROUP RING FINGER PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0035102
all species →		Cellular ComponentPRC1 complexInterproscan
GO:0036353
all species →		Biological Processobsolete histone H2A-K119 monoubiquitinationInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap2.1980.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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