Gene detail

Detailed information of evm.model.Ap2.1994 in Astrangia poculata

Genomic Location: Ap2:21504551...21517738
NR annotation: CAH3143074.1, unnamed protein product [Porites lobata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.1994

atgcgattcgacagtgtaacaagagtttttgaaaaggcccagcgtggttttcagcaccacaacaaactcttaacagaactgaaaaagctgcatgacaagtcatcgcaggatgaatttcagaaaagttttgtgtggcacttgaaacatgccatggtggtgtttaacagagaacccgccgtcgaaagagtgattgagtttgtggcaaactatacgacgttaaaagatcaccgtacttctcaagttcagaaggatggccaagcaagtgatggtgaagaagatgacacaagcaatgtctttcttgattttatcttcacattcctactggactcacatgaagctcaagacaaagcggtgcggttccgtgtctgtcagcttatcaacaagttgttaaataacctggatgacgatgccgtgattgatgatgacctggcagagaggatctttgagagtatgttgacacgcctccatgacaagatccctgcagtaagggtacaggctgtcgccgcaatctccaggcttcaggacccttcagatccagagtgcattgtaatgtctacatatcttaaactaatgtccaatgataccagtgctgaagtgcgtagagctgtgcttctcaacattgctctttcttctcaaacattagagggaataatagaaagaacccaagatgttacagactcagtgaggaagttagcttatcgtatcctagcggataaggtgagcatcaagtcattaaccatagctcagcgtgtgcagctgctgtccaatggattacatgacagatcaaagtcaatccaggatgcctttgcaaaggaactccttaatggctggctgaaaagttttgacaaggatgttatcaaacttctgaagtgcttagatgtggaaggatgcatagaagtagctgaattagctttgaagacaatactcaaaggattgccgaaagaagatttaccgggttgtgttgatactttaaagaaaggacaagaagaagaaggcccagttagaatcagctatgaggcccttgatgtcgagacagcattttattggagatgcctcggagaacatttcaagtccatgggtgtggatggtgaagaactcttggatgatcttcttcctgaagtatcagaattttgcaaatatattcaggggtatgtggatagctttttatgcaggacagctccagaacatgatcattcagaagttcaacagatatttatcgccagacaacttttgacactgatgggtgtcgtggacctttctgatgaagttggaagaaagaacctgtgtcaactgatgcatgacttgctggtcctaccagagatcccagaatcattagttgggattcttcatgcaaggtatatcgatgttcaaccagaggaaaccaacagaatccaagaacttgttgaaatcattgctgatgtcagacaacccattgtcatgattgagacagctcagaacaaggaggaaaaacggcaatgggaacttaaggttgctggaatccgtgtgaagctaaaccagttccgtgatgagatggaacagtgtgtttcaaaccaggattttggaagggcagccgaactaaagcagcaaattgcagaactggaggagcaaaaggaaatacttgactcagaggagaattccttctctcagactgtcagagaagaaaaggatgatcctgatactctattgaagtgtttaaccatcgcatctgagatgctgcagggtgtggcaacaaatggactgaacccaactctaactactctggttcaaacattgattctgcctggagtacagaatgaagatccttcggtgcgcaacatggcagttaaatgcttgggcttgtgtgctttactttcttgtgaatttgcccgcacgcatcttgtactattcctccaggtggctcaacttgaccaagagattgtgcgagtaacagctctccaggttgtttttggccttcttctaacctttggtcttgaggcttttagagtgaatgctgcagtacctgagctgaagcatgatgaaccaagcaccactggcaaggaacaggacaactcaggaaacgaggacaatgagaatgaagagggtgacgatgacagtgagaagagcgatgaggatgatgtggaagagagccaggctcctgatacagatactgctgcaagtgttctcacaatacttacaggacttctagagagtgagagcaatgaccttcgcaatgtggctgctgagggactggccaaattgctgttggcaggtcgtgttcttagtgccaaactgttctcgcggcttctcctactgtggtataatcccaccactgaagatgatgttaacctgaggcactgcttgggtgtctttttccctgtttttgcctttgcttcaagcacaaaccaggagctggtagaagaggcattccttccaaccctgaagacgttattcagtgctcctgtgtcatctccactggcatcagttaacatcaacaatgtggcagagttgctggtggatcttacaaactcaaaatacttagagaagggaaactccatagatacctccaagggtagcagcattcatgcttccctgagccttgctgtggctaatgagatcctgtctagtcccagtgctcctggtgtacggatgctgtgcaagatacttaccatgatggacctaactggctgttcacagtctacagtcaaggaaataaaagttctttctacaatgatgattaatcatgaggggattgaagatagtgcctctgcgaagtcattgaataaattccagaaaatgctgcagattcttacagactctgaaaatgatgtctcccagacagaacctgaagatagcaaacaagtaaatgcagaggaaacagaagacatcaatgaggacaagacaaatgacacaactacagtaaatgatacagacacccgtgatcaggatagactggagggaaataactgtcctcctcaagacccagagtctacagaacacacaggatgcaacacagatgaaacagagacccttactgaggaaacctctacagtcctcaacaaaacccaaactcagaataaaccaccaaagactaaatcaagaacaaagagtagaaagcaagggacaaagtcaactacaagagatacagaactcagtccttccagtgtgtcaagtgaagaaacaccagcaagacggacaagatctagcaggaaaagcaagtctgatgctagcaaaaagttcaagtccatgataaactctgaggatgaaaacagtgaaaaagaaaatgtttctagcaatgatgctgaggatgtatttaactaa

Transcript

evm.model.Ap2.1994

ATGCGATTCGACAGTGTAACAAGAGTTTTTGAAAAGGCCCAGCGTGGTTTTCAGCACCACAACAAACTCTTAACAGAACTGAAAAAGCTGCATGACAAGTCATCGCAGGATGAATTTCAGAAAAGTTTTGTGTGGCACTTGAAACATGCCATGGTGGTGTTTAACAGAGAACCCGCCGTCGAAAGAGTGATTGAGTTTGTGGCAAACTATACGACGTTAAAAGATCACCGTACTTCTCAAGTTCAGAAGGATGGCCAAGCAAGTGATGGTGAAGAAGATGACACAAGCAATGTCTTTCTTGATTTTATCTTCACATTCCTACTGGACTCACATGAAGCTCAAGACAAAGCGGTGCGGTTCCGTGTCTGTCAGCTTATCAACAAGTTGTTAAATAACCTGGATGACGATGCCGTGATTGATGATGACCTGGCAGAGAGGATCTTTGAGAGTATGTTGACACGCCTCCATGACAAGATCCCTGCAGTAAGGGTACAGGCTGTCGCCGCAATCTCCAGGCTTCAGGACCCTTCAGATCCAGAGTGCATTGTAATGTCTACATATCTTAAACTAATGTCCAATGATACCAGTGCTGAAGTGCGTAGAGCTGTGCTTCTCAACATTGCTCTTTCTTCTCAAACATTAGAGGGAATAATAGAAAGAACCCAAGATGTTACAGACTCAGTGAGGAAGTTAGCTTATCGTATCCTAGCGGATAAGGTGAGCATCAAGTCATTAACCATAGCTCAGCGTGTGCAGCTGCTGTCCAATGGATTACATGACAGATCAAAGTCAATCCAGGATGCCTTTGCAAAGGAACTCCTTAATGGCTGGCTGAAAAGTTTTGACAAGGATGTTATCAAACTTCTGAAGTGCTTAGATGTGGAAGGATGCATAGAAGTAGCTGAATTAGCTTTGAAGACAATACTCAAAGGATTGCCGAAAGAAGATTTACCGGGTTGTGTTGATACTTTAAAGAAAGGACAAGAAGAAGAAGGCCCAGTTAGAATCAGCTATGAGGCCCTTGATGTCGAGACAGCATTTTATTGGAGATGCCTCGGAGAACATTTCAAGTCCATGGGTGTGGATGGTGAAGAACTCTTGGATGATCTTCTTCCTGAAGTATCAGAATTTTGCAAATATATTCAGGGGTATGTGGATAGCTTTTTATGCAGGACAGCTCCAGAACATGATCATTCAGAAGTTCAACAGATATTTATCGCCAGACAACTTTTGACACTGATGGGTGTCGTGGACCTTTCTGATGAAGTTGGAAGAAAGAACCTGTGTCAACTGATGCATGACTTGCTGGTCCTACCAGAGATCCCAGAATCATTAGTTGGGATTCTTCATGCAAGGTATATCGATGTTCAACCAGAGGAAACCAACAGAATCCAAGAACTTGTTGAAATCATTGCTGATGTCAGACAACCCATTGTCATGATTGAGACAGCTCAGAACAAGGAGGAAAAACGGCAATGGGAACTTAAGGTTGCTGGAATCCGTGTGAAGCTAAACCAGTTCCGTGATGAGATGGAACAGTGTGTTTCAAACCAGGATTTTGGAAGGGCAGCCGAACTAAAGCAGCAAATTGCAGAACTGGAGGAGCAAAAGGAAATACTTGACTCAGAGGAGAATTCCTTCTCTCAGACTGTCAGAGAAGAAAAGGATGATCCTGATACTCTATTGAAGTGTTTAACCATCGCATCTGAGATGCTGCAGGGTGTGGCAACAAATGGACTGAACCCAACTCTAACTACTCTGGTTCAAACATTGATTCTGCCTGGAGTACAGAATGAAGATCCTTCGGTGCGCAACATGGCAGTTAAATGCTTGGGCTTGTGTGCTTTACTTTCTTGTGAATTTGCCCGCACGCATCTTGTACTATTCCTCCAGGTGGCTCAACTTGACCAAGAGATTGTGCGAGTAACAGCTCTCCAGGTTGTTTTTGGCCTTCTTCTAACCTTTGGTCTTGAGGCTTTTAGAGTGAATGCTGCAGTACCTGAGCTGAAGCATGATGAACCAAGCACCACTGGCAAGGAACAGGACAACTCAGGAAACGAGGACAATGAGAATGAAGAGGGTGACGATGACAGTGAGAAGAGCGATGAGGATGATGTGGAAGAGAGCCAGGCTCCTGATACAGATACTGCTGCAAGTGTTCTCACAATACTTACAGGACTTCTAGAGAGTGAGAGCAATGACCTTCGCAATGTGGCTGCTGAGGGACTGGCCAAATTGCTGTTGGCAGGTCGTGTTCTTAGTGCCAAACTGTTCTCGCGGCTTCTCCTACTGTGGTATAATCCCACCACTGAAGATGATGTTAACCTGAGGCACTGCTTGGGTGTCTTTTTCCCTGTTTTTGCCTTTGCTTCAAGCACAAACCAGGAGCTGGTAGAAGAGGCATTCCTTCCAACCCTGAAGACGTTATTCAGTGCTCCTGTGTCATCTCCACTGGCATCAGTTAACATCAACAATGTGGCAGAGTTGCTGGTGGATCTTACAAACTCAAAATACTTAGAGAAGGGAAACTCCATAGATACCTCCAAGGGTAGCAGCATTCATGCTTCCCTGAGCCTTGCTGTGGCTAATGAGATCCTGTCTAGTCCCAGTGCTCCTGGTGTACGGATGCTGTGCAAGATACTTACCATGATGGACCTAACTGGCTGTTCACAGTCTACAGTCAAGGAAATAAAAGTTCTTTCTACAATGATGATTAATCATGAGGGGATTGAAGATAGTGCCTCTGCGAAGTCATTGAATAAATTCCAGAAAATGCTGCAGATTCTTACAGACTCTGAAAATGATGTCTCCCAGACAGAACCTGAAGATAGCAAACAAGTAAATGCAGAGGAAACAGAAGACATCAATGAGGACAAGACAAATGACACAACTACAGTAAATGATACAGACACCCGTGATCAGGATAGACTGGAGGGAAATAACTGTCCTCCTCAAGACCCAGAGTCTACAGAACACACAGGATGCAACACAGATGAAACAGAGACCCTTACTGAGGAAACCTCTACAGTCCTCAACAAAACCCAAACTCAGAATAAACCACCAAAGACTAAATCAAGAACAAAGAGTAGAAAGCAAGGGACAAAGTCAACTACAAGAGATACAGAACTCAGTCCTTCCAGTGTGTCAAGTGAAGAAACACCAGCAAGACGGACAAGATCTAGCAGGAAAAGCAAGTCTGATGCTAGCAAAAAGTTCAAGTCCATGATAAACTCTGAGGATGAAAACAGTGAAAAAGAAAATGTTTCTAGCAATGATGCTGAGGATGTATTTAACTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9YHB5	Condensin complex subunit 3 OS=Xenopus laevis OX=8355 GN=ncapg PE=1 SV=1
Q9BPX3	Condensin complex subunit 3 OS=Homo sapiens OX=9606 GN=NCAPG PE=1 SV=1
Q10429	Condensin complex subunit 3 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=cnd3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004586 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02151 all species →	UVR	UvrB/uvrC motif	Family	Interproscan
PF12719 all species →	Cnd3	Nuclear condensing complex subunits, C-term domain	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001943 all species →	Domain	UVR domain	Interproscan
IPR027165 all species →	Family	Condensin complex subunit 3	Interproscan
IPR025977 all species →	Domain	Nuclear condensin complex subunit 3, C-terminal domain	Interproscan
IPR011989 all species →	Homologous_superfamily	Armadillo-like helical	Interproscan
IPR016024 all species →	Homologous_superfamily	Armadillo-type fold	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14418 all species →	CONDENSIN COMPLEX SUBUNIT 3-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0000793 all species →	Cellular Component	condensed chromosome	Interproscan
GO:0000796 all species →	Cellular Component	condensin complex	Interproscan
GO:0007076 all species →	Biological Process	mitotic chromosome condensation	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06678	YCG1, CAPG; condensin complex subunit 3	-	Chromosome and associated proteins	ko03036	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.