Genomic Location: Ap2:21810882...21824727
NR annotation: XP_020610018.1, vesicular glutamate transporter 2-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap2.2018 |
| Transcript |
| evm.model.Ap2.2018 |
| Protein |
| evm.model.Ap2.2018 |
| UniProt accession | Description |
|---|---|
| Q9JI12 | Vesicular glutamate transporter 2 OS=Rattus norvegicus OX=10116 GN=Slc17a6 PE=1 SV=1 |
| A6QLI1 | Vesicular glutamate transporter 2 OS=Bos taurus OX=9913 GN=SLC17A6 PE=2 SV=1 |
| Q9P2U8 | Vesicular glutamate transporter 2 OS=Homo sapiens OX=9606 GN=SLC17A6 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0000307 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF07690 all species → | MFS_1 | Major Facilitator Superfamily | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR036259 all species → | Homologous_superfamily | MFS transporter superfamily | Interproscan |
| IPR011701 all species → | Family | Major facilitator superfamily | Interproscan |
| IPR050382 all species → | Family | Major Facilitator Superfamily Sodium/Anion Cotransporter | Interproscan |
| IPR020846 all species → | Domain | Major facilitator superfamily domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR11662 all species → | SOLUTE CARRIER FAMILY 17 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0022857 all species → | Molecular Function | transmembrane transporter activity | Interproscan |
| GO:0055085 all species → | Biological Process | transmembrane transport | Interproscan |
| GO:0006820 all species → | Biological Process | monoatomic anion transport | Interproscan |
| GO:0016021 all species → | Cellular Component | membrane | Interproscan |
evm.model.Ap2.2018.Transcript abundance of evm.model.Ap2.2018 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
