Genomic Location: Ap2:22951308...22959696
NR annotation: KAJ7392293.1, hypothetical protein OS493_011949 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap2.2154 |
| Transcript |
| evm.model.Ap2.2154 |
| Protein |
| evm.model.Ap2.2154 |
| UniProt accession | Description |
|---|---|
| Q9WU62 | Inner centromere protein OS=Mus musculus OX=10090 GN=Incenp PE=1 SV=2 |
| O13024 | Inner centromere protein A OS=Xenopus laevis OX=8355 GN=incenp-a PE=1 SV=1 |
| Q0IHP2 | Inner centromere protein OS=Xenopus tropicalis OX=8364 GN=incenp PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0006759 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03941 all species → | INCENP_ARK-bind | Inner centromere protein, ARK binding region | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR005635 all species → | Domain | Inner centromere protein, ARK-binding domain | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR13142 all species → | INNER CENTROMERE PROTEIN | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000281 all species → | Biological Process | mitotic cytokinesis | Interproscan |
| GO:0000776 all species → | Cellular Component | kinetochore | Interproscan |
| GO:0005634 all species → | Cellular Component | nucleus | Interproscan |
| GO:0030496 all species → | Cellular Component | midbody | Interproscan |
| GO:0032133 all species → | Cellular Component | chromosome passenger complex | Interproscan |
| GO:0051257 all species → | Biological Process | meiotic spindle midzone assembly | Interproscan |
| GO:0051310 all species → | Biological Process | metaphase chromosome alignment | Interproscan |
| GO:1990385 all species → | Cellular Component | meiotic spindle midzone | Interproscan |
evm.model.Ap2.2154.Transcript abundance of evm.model.Ap2.2154 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
