Genomic Location: Ap2:23056961...23091066
NR annotation: XP_020606052.1, DENN domain-containing protein 5B-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap2.2163.1.5f15e0f8 |
| Transcript |
| evm.model.Ap2.2163.1.5f15e0f8 |
| Protein |
| evm.model.Ap2.2163.1.5f15e0f8 |
| UniProt accession | Description |
|---|---|
| Q6ZUT9 | DENN domain-containing protein 5B OS=Homo sapiens OX=9606 GN=DENND5B PE=1 SV=2 |
| A2RSQ0 | DENN domain-containing protein 5B OS=Mus musculus OX=10090 GN=Dennd5b PE=1 SV=2 |
| G3V7Q0 | DENN domain-containing protein 5A OS=Rattus norvegicus OX=10116 GN=Dennd5a PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002958 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF03456 all species → | uDENN | uDENN domain | Domain | Interproscan |
| PF01477 all species → | PLAT | PLAT/LH2 domain | Domain | Interproscan |
| PF03455 all species → | dDENN | dDENN domain | Domain | Interproscan |
| PF02759 all species → | RUN | RUN domain | Family | Interproscan |
| PF02141 all species → | DENN | DENN (AEX-3) domain | Family | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR037516 all species → | Domain | Tripartite DENN domain | Interproscan |
| IPR005113 all species → | Domain | uDENN domain | Interproscan |
| IPR001024 all species → | Domain | PLAT/LH2 domain | Interproscan |
| IPR037213 all species → | Homologous_superfamily | RUN domain superfamily | Interproscan |
| IPR047278 all species → | Family | DENN domain-containing protein 5A/B | Interproscan |
| IPR005112 all species → | Domain | dDENN domain | Interproscan |
| IPR004012 all species → | Domain | RUN domain | Interproscan |
| IPR001194 all species → | Domain | cDENN domain | Interproscan |
| IPR036392 all species → | Homologous_superfamily | PLAT/LH2 domain superfamily | Interproscan |
| IPR043153 all species → | Homologous_superfamily | DENN domain, C-terminal lobe | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR46070 all species → | PINSTRIPE, ISOFORM A | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
| GO:0005085 all species → | Molecular Function | guanyl-nucleotide exchange factor activity | Interproscan |
| GO:0031267 all species → | Molecular Function | small GTPase binding | Interproscan |
evm.model.Ap2.2163.1.5f15e0f8.Transcript abundance of evm.model.Ap2.2163.1.5f15e0f8 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
