Detailed information of evm.model.Ap2.2188 in Astrangia poculata

Genomic Location: Ap2:23451766...23453185
NR annotation: XP_020629353.1, helix-loop-helix protein 2-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q90259Achaete-scute homolog 1a OS=Danio rerio OX=7955 GN=ascl1a PE=2 SV=1
Q06234Achaete-scute homolog 1 OS=Xenopus laevis OX=8355 GN=ascl1 PE=2 SV=1
Q02067Achaete-scute homolog 1 OS=Mus musculus OX=10090 GN=Ascl1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0001246 (this species only)
Transcription factor familybHLH · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00010
all species →		HLHHelix-loop-helix DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR011598
all species →		DomainMyc-type, basic helix-loop-helix (bHLH) domainInterproscan
IPR036638
all species →		Homologous_superfamilyHelix-loop-helix DNA-binding domain superfamilyInterproscan
IPR050283
all species →		FamilyE-box Binding Transcriptional RegulatorsInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR23349
all species →		BASIC HELIX-LOOP-HELIX TRANSCRIPTION FACTOR, TWISTInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0046983
all species →		Molecular Functionprotein dimerization activityInterproscan
GO:0000977
all species →		Molecular FunctionRNA polymerase II transcription regulatory region sequence-specific DNA bindingInterproscan
GO:0000981
all species →		Molecular FunctionDNA-binding transcription factor activity, RNA polymerase II-specificInterproscan
GO:0006357
all species →		Biological Processregulation of transcription by RNA polymerase IIInterproscan
GO:0032502
all species →		Biological Processdevelopmental processInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap2.2188.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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