Genomic Location: Ap2:24462378...24489826
NR annotation: KAJ7379046.1, hypothetical protein OS493_018841 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap2.2313 |
| Transcript |
| evm.model.Ap2.2313 |
| Protein |
| evm.model.Ap2.2313 |
| UniProt accession | Description |
|---|---|
| Q6A078 | Centrosomal protein of 290 kDa OS=Mus musculus OX=10090 GN=Cep290 PE=1 SV=2 |
| O15078 | Centrosomal protein of 290 kDa OS=Homo sapiens OX=9606 GN=CEP290 PE=1 SV=2 |
| P85001 | Centrosomal protein of 290 kDa OS=Danio rerio OX=7955 GN=cep290 PE=2 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002535 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF16574 all species → | CEP209_CC5 | Coiled-coil region of centrosome protein CE290 | Coiled-coil | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR026201 all species → | Family | Centrosomal protein of 290kDa | Interproscan |
| IPR032321 all species → | Domain | Centrosomal protein of 290kDa, coiled-coil region | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR18879 all species → | CENTROSOMAL PROTEIN OF 290 KDA | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0034451 all species → | Cellular Component | centriolar satellite | Interproscan |
| GO:0035869 all species → | Cellular Component | ciliary transition zone | Interproscan |
| GO:0097711 all species → | Biological Process | ciliary basal body-plasma membrane docking | Interproscan |
| GO:1905349 all species → | Biological Process | ciliary transition zone assembly | Interproscan |
| GO:1905515 all species → | Biological Process | non-motile cilium assembly | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K16533 | CEP290, NPHP6; centrosomal protein CEP290 | - | Cilium and associated proteins | ko03037 | deepkoala |
Transcript abundance of evm.model.Ap2.2313 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
