Detailed information of evm.model.Ap2.2446_evm.model.Ap2.2447 in Astrangia poculata

Genomic Location: Ap2:25812724...25822075
NR annotation: XP_027060560.1, tripartite motif-containing protein 2-like [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0000293 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF00643
all species →		zf-B_boxB-box zinc fingerDomainInterproscan
PF00630
all species →		FilaminFilamin/ABP280 repeatDomainInterproscan
PF17170
all species →		DUF51286-bladed beta-propellerRepeatInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR001258
all species →		RepeatNHL repeatInterproscan
IPR017868
all species →		RepeatFilamin/ABP280 repeat-likeInterproscan
IPR000315
all species →		DomainB-box-type zinc fingerInterproscan
IPR013783
all species →		Homologous_superfamilyImmunoglobulin-like foldInterproscan
IPR050952
all species →		FamilyTripartite Motif and NHL Repeat Containing E3 LigasesInterproscan
IPR014756
all species →		Homologous_superfamilyImmunoglobulin E-setInterproscan
IPR011042
all species →		Homologous_superfamilySix-bladed beta-propeller, TolB-likeInterproscan
IPR001298
all species →		RepeatFilamin/ABP280 repeatInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR24104
all species →		E3 UBIQUITIN-PROTEIN LIGASE NHLRC1-RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005515
all species →		Molecular Functionprotein bindingInterproscan
GO:0008270
all species →		Molecular Functionzinc ion bindingInterproscan
GO:0000209
all species →		Biological Processprotein polyubiquitinationInterproscan
GO:0043161
all species →		Biological Processproteasome-mediated ubiquitin-dependent protein catabolic processInterproscan
GO:0061630
all species →		Molecular Functionubiquitin protein ligase activityInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap2.2446_evm.model.Ap2.2447.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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