Gene detail

Detailed information of evm.model.Ap2.2466 in Astrangia poculata

Genomic Location: Ap2:25996641...26020838
NR annotation: KAJ7333607.1, Serine/threonine-protein phosphatase 6 regulatory subunit 2 [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.2466

atgttttggaaattcgatttgcaccccagctcagccatagacaccatgttgacgagagaggactgcactttgagcgaaatattggacgaagatgacgtactccaagagacaaaatcacaaaatagaaagttggtggatttttttcttagaccagagatcatggaggaactagtaaacctggttctgcaaccaccagatgaaaacaaagaggaatctcttaaatacaaacatcccaacactgcctgtgaagtattaacagctgatgtgtatgcaatcattgacaagttaacaaacaatgaggaactactcaacaaaatctggtcatttatggagtctgagcctccacttaatcctttactagcaagtttcttcagtaaagttatgggagttcttataagtaggaagacgtctttgatgctagagtacttaaaaagtaaagacgattttgtaaatgccattgtgaaacaccttgggacatccgccgtaatggatttactcctgcggttaattaccagtgtcgaatcaccacaactgcggcaagacttacttgagtggttaaatagtcaaaaattagtggagaggctggtttctttaattgaccctgaaattgatgaagagagaagctgcaatgccgcacaaagcctgtgcgatgttatccgtctcagtagagatcacatgtcgcaactccaagagaatgctgatcaagatcctttactagatgctgttcaacggagggagactgtgtcagagctattggatcatatgcttcatgatgctcaacttcatcctgatgtagcactagtcaatggaatctctgttttactcacactcctggaagtcaggaaaggaagtggagagggagaagaaccaatgacagccttggatgcagaaagacttgcacagggtcagtgcttagcagccttaaccagctataaagacttcacagcttctatgaagccaatgctgacaacaataggaactttagaccctccccttgggaatgctcgacttcaagcctccaagctggtggctgctatattagccactaatagtgatacaataaatgctgaactagctgaactaggaactctaaaagttttatgggagttatttttcaagtattcatggaataattttctccatacccaagtggagaagtgtataaccacagttttaaacaatcccccaactgaagaagatggggaacagtgtactcctttagttgatgttttatttaaagattgtcaaattatacaaaggatactccaggagtgggaggatcttgattcagaaaatggtcaggccaaccaacataaaggatatatgggtcatttgacaaatgtggcaaacagtattgttcagagtgtagagaaagggaaaaacaaagctacacttgatgcaatatttgctgacttgccagagaaagttcgtgaaagatggaacgcatttgtgactggaaagttagcagatgttaacaaacaaaacttatctgaactggttggtcatcattttcagtcttcctcggatgatgatgatgatttcaagcctatatctttcttgcatacagagagctcgcttcaacaggcattttcacggtatcaaatgcagcagataacaacagaattcatggacacatttggccttgatgaagacgagtttcaagaaccagacaactcaattacgggaccatttgacagaattggagatatcagttttacaataaatgcccatgaagataatcccaacgctgcattatttgaggcatgctgtaatgaaaaaattcaacaatttgatgatagtggaagtgatgaagaagatatttgggaggaaaaggaactcacgttttcatctattgcggaatcaaggcaaagcaccctgtcacctgaaggagaaagtgatagcgagagtagtgacagtgatgaagatttagagtcacctggtcgtaaagcacccagtgtcccgtttgagaatggtaacagtccccagggatctccagtaaagcaacctcctccaactacagacattaaaatggaagtagatcccactgatgtccccagttactttggccatagcaatcagcttgtgagagacaagcttggcttgtcacagccacctactcttccagttgctgacacctactttaaacattttgaaattcctgatgtctatgatgtatacttatggcaaagaaagctgcagcagcttttttctcagtgtatgaccatgagtatgatgtgttctgcagcatggccccttgcatttgaacccgaggaagtggctgcagatgaagctgtgtccatggatgcatcagacgtaggctggggagagacaccagtggcaacaacagacacaggatgggcaacatttgatagttttactgacatcagaatggctcccagcagtgaaccttcagaggaagcagtggactctccagttgccatggaaacagagccagcagctcctacttcacaagcaggagcagcatacaggaggaaacaggagaacctgaagaaaaaccctaggagcaaggaccagaaccaacaacaaactcaacccacatatgacactgagtccgggaatcaaaccttggccacattgatgggagttgtcgaagaggagtccaacccagataagcaggatgagctaggaacacagggactagtatccagtgctgaggctcttggagttgcaacagatgaaaataaagatgaatctacagacaaggcagccccgtcaccagcccttgatagagcagcacggtgtgagggtcaaccaagtgacagttcagctccactggcgacagatgatagtgatgatgatatctcagatgatgaaactaccagtgtgaaatgtgaggaggtattttccaggttggcagaagtaggcacaacagaggaagtctctgcaaatagtgacataatgccgttgaataatgttcatgaagataaaatgacaagtacaaaactggacaatggacctgtggacttcaccaaggaactggaaagtcagggcttaacaaagaaaactaaactggatcaagatacacggtcacccttaaaggaattggtggaatcacaaacaaatctagtgaatggcccaggctag

Transcript

evm.model.Ap2.2466

ATGTTTTGGAAATTCGATTTGCACCCCAGCTCAGCCATAGACACCATGTTGACGAGAGAGGACTGCACTTTGAGCGAAATATTGGACGAAGATGACGTACTCCAAGAGACAAAATCACAAAATAGAAAGTTGGTGGATTTTTTTCTTAGACCAGAGATCATGGAGGAACTAGTAAACCTGGTTCTGCAACCACCAGATGAAAACAAAGAGGAATCTCTTAAATACAAACATCCCAACACTGCCTGTGAAGTATTAACAGCTGATGTGTATGCAATCATTGACAAGTTAACAAACAATGAGGAACTACTCAACAAAATCTGGTCATTTATGGAGTCTGAGCCTCCACTTAATCCTTTACTAGCAAGTTTCTTCAGTAAAGTTATGGGAGTTCTTATAAGTAGGAAGACGTCTTTGATGCTAGAGTACTTAAAAAGTAAAGACGATTTTGTAAATGCCATTGTGAAACACCTTGGGACATCCGCCGTAATGGATTTACTCCTGCGGTTAATTACCAGTGTCGAATCACCACAACTGCGGCAAGACTTACTTGAGTGGTTAAATAGTCAAAAATTAGTGGAGAGGCTGGTTTCTTTAATTGACCCTGAAATTGATGAAGAGAGAAGCTGCAATGCCGCACAAAGCCTGTGCGATGTTATCCGTCTCAGTAGAGATCACATGTCGCAACTCCAAGAGAATGCTGATCAAGATCCTTTACTAGATGCTGTTCAACGGAGGGAGACTGTGTCAGAGCTATTGGATCATATGCTTCATGATGCTCAACTTCATCCTGATGTAGCACTAGTCAATGGAATCTCTGTTTTACTCACACTCCTGGAAGTCAGGAAAGGAAGTGGAGAGGGAGAAGAACCAATGACAGCCTTGGATGCAGAAAGACTTGCACAGGGTCAGTGCTTAGCAGCCTTAACCAGCTATAAAGACTTCACAGCTTCTATGAAGCCAATGCTGACAACAATAGGAACTTTAGACCCTCCCCTTGGGAATGCTCGACTTCAAGCCTCCAAGCTGGTGGCTGCTATATTAGCCACTAATAGTGATACAATAAATGCTGAACTAGCTGAACTAGGAACTCTAAAAGTTTTATGGGAGTTATTTTTCAAGTATTCATGGAATAATTTTCTCCATACCCAAGTGGAGAAGTGTATAACCACAGTTTTAAACAATCCCCCAACTGAAGAAGATGGGGAACAGTGTACTCCTTTAGTTGATGTTTTATTTAAAGATTGTCAAATTATACAAAGGATACTCCAGGAGTGGGAGGATCTTGATTCAGAAAATGGTCAGGCCAACCAACATAAAGGATATATGGGTCATTTGACAAATGTGGCAAACAGTATTGTTCAGAGTGTAGAGAAAGGGAAAAACAAAGCTACACTTGATGCAATATTTGCTGACTTGCCAGAGAAAGTTCGTGAAAGATGGAACGCATTTGTGACTGGAAAGTTAGCAGATGTTAACAAACAAAACTTATCTGAACTGGTTGGTCATCATTTTCAGTCTTCCTCGGATGATGATGATGATTTCAAGCCTATATCTTTCTTGCATACAGAGAGCTCGCTTCAACAGGCATTTTCACGGTATCAAATGCAGCAGATAACAACAGAATTCATGGACACATTTGGCCTTGATGAAGACGAGTTTCAAGAACCAGACAACTCAATTACGGGACCATTTGACAGAATTGGAGATATCAGTTTTACAATAAATGCCCATGAAGATAATCCCAACGCTGCATTATTTGAGGCATGCTGTAATGAAAAAATTCAACAATTTGATGATAGTGGAAGTGATGAAGAAGATATTTGGGAGGAAAAGGAACTCACGTTTTCATCTATTGCGGAATCAAGGCAAAGCACCCTGTCACCTGAAGGAGAAAGTGATAGCGAGAGTAGTGACAGTGATGAAGATTTAGAGTCACCTGGTCGTAAAGCACCCAGTGTCCCGTTTGAGAATGGTAACAGTCCCCAGGGATCTCCAGTAAAGCAACCTCCTCCAACTACAGACATTAAAATGGAAGTAGATCCCACTGATGTCCCCAGTTACTTTGGCCATAGCAATCAGCTTGTGAGAGACAAGCTTGGCTTGTCACAGCCACCTACTCTTCCAGTTGCTGACACCTACTTTAAACATTTTGAAATTCCTGATGTCTATGATGTATACTTATGGCAAAGAAAGCTGCAGCAGCTTTTTTCTCAGTGTATGACCATGAGTATGATGTGTTCTGCAGCATGGCCCCTTGCATTTGAACCCGAGGAAGTGGCTGCAGATGAAGCTGTGTCCATGGATGCATCAGACGTAGGCTGGGGAGAGACACCAGTGGCAACAACAGACACAGGATGGGCAACATTTGATAGTTTTACTGACATCAGAATGGCTCCCAGCAGTGAACCTTCAGAGGAAGCAGTGGACTCTCCAGTTGCCATGGAAACAGAGCCAGCAGCTCCTACTTCACAAGCAGGAGCAGCATACAGGAGGAAACAGGAGAACCTGAAGAAAAACCCTAGGAGCAAGGACCAGAACCAACAACAAACTCAACCCACATATGACACTGAGTCCGGGAATCAAACCTTGGCCACATTGATGGGAGTTGTCGAAGAGGAGTCCAACCCAGATAAGCAGGATGAGCTAGGAACACAGGGACTAGTATCCAGTGCTGAGGCTCTTGGAGTTGCAACAGATGAAAATAAAGATGAATCTACAGACAAGGCAGCCCCGTCACCAGCCCTTGATAGAGCAGCACGGTGTGAGGGTCAACCAAGTGACAGTTCAGCTCCACTGGCGACAGATGATAGTGATGATGATATCTCAGATGATGAAACTACCAGTGTGAAATGTGAGGAGGTATTTTCCAGGTTGGCAGAAGTAGGCACAACAGAGGAAGTCTCTGCAAATAGTGACATAATGCCGTTGAATAATGTTCATGAAGATAAAATGACAAGTACAAAACTGGACAATGGACCTGTGGACTTCACCAAGGAACTGGAAAGTCAGGGCTTAACAAAGAAAACTAAACTGGATCAAGATACACGGTCACCCTTAAAGGAATTGGTGGAATCACAAACAAATCTAGTGAATGGCCCAGGCTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q5F471	Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Gallus gallus OX=9031 GN=PPP6R3 PE=2 SV=1
Q5H9R7	Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Homo sapiens OX=9606 GN=PPP6R3 PE=1 SV=2
Q922D4	Serine/threonine-protein phosphatase 6 regulatory subunit 3 OS=Mus musculus OX=10090 GN=Ppp6r3 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0004058 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF04499 all species →	SAPS	SIT4 phosphatase-associated protein	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR007587 all species →	Family	SIT4 phosphatase-associated protein family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12634 all species →	SIT4 YEAST -ASSOCIATING PROTEIN-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0019903 all species →	Molecular Function	protein phosphatase binding	Interproscan
GO:0043666 all species →	Biological Process	obsolete regulation of phosphoprotein phosphatase activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005829 all species →	Cellular Component	cytosol	Interproscan
GO:0019888 all species →	Molecular Function	protein phosphatase regulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.2466.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.