Gene detail

Detailed information of evm.model.Ap2.2498 in Astrangia poculata

Genomic Location: Ap2:26308549...26312551
NR annotation: XP_022798487.1, uncharacterized protein LOC111336627 [Stylophora pistillata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.2498

atgtccgctatcgaataccgtaatttactgtatgagataagccggcaaatcgattggttaactgaacgacagcggttactatttatctgcgaagccgaaggattgattgtgacaggaagtgaaagcaatatccaagaagtcctctctttgtttaaagggctggaggagcggaatcatctaggaatcgatcgtctagaagtactgaaggatcttttaaaaggcacagggaaatggaatctcctaggattagtcgaaaaatttgaaatcaaaagaaaagagtacaacaatttactagaacagatttgctttgcactcgatcagggcaaccatctagaacgagtcatttcaatgtgcaaagaaaatatatcgtatgacagggaaagagacttcaaagatgttcgaacactgtttacagaactagaaaaacagaataacttgggaatcgcacgccttgacatcttgaaaaacattgtgttagacgcagagaaaccagacttgcttgaacaaattgtggagtttgaggagaagagaaaacaggaggaaattgaggagagaaaaagagctgagtttgaggaatcaaggataagaacaaaagatcaggctgttgctgttttgtcttctgccaaaattgctggagagaagttattaggaacctttacacctcattgtactttccgtaatgttgctggtggtatggtagtcgttactacatggatgatcctacgaagaagttcaaatctcgaagaatttgtaaacgcttttacagaagcaattcttccacttggcaataccctgcgagcaataagcgaaggatctgtgtgcttcacgatacaggctgaaaacagatcagctcttcaggcattgtgggaacgataccagaacggcacactgcaaaaagacctgcaagagtttctagtgactgaagatgttaaacaacttgcaaatggcgaggaagtgattttgactgtggaaattgatgaacaagaatataagaatgcatgtttagacctgaaggtagcagaaacacaagttgaaggttttcaagacgtggaacttggctcaaaatctaagtttacgttcgtgaccagagatcttgaaggacacaagttctataatgcagacaatgaggtaacggtacttacactggatggtacttacactgtaagttttacaccagacactgtaggtccgcatagcgtgttaatcacagttaatggccagccgctgaccggtagtccctggagtgttcaggtgtctcctcatcagtacaaacaagtgtttacatttggatcacgtggcagtggacccggacagtttgatttgtctcacggtggttcaattaacggcatttctattaacgagaacactgaccacattgcagtagcagacactcacaataatagagttcaaatatttagtgcagatggctcttacctgagagagtttggtcagaggggcattaaagctgaacgagtacgcagtccacgcgcagttgcgttcaccaaaaatggcgaccttattgtctatcatactggtaagatttctctattcagtgagagtggtcagtttattaagcacatcaccaacaagcacctaaaggttgcaatgagcttttctttagcatctgatgacaatatcgtcgcgtgcgactgggatgacaagaaaatcaaggacctctcccctgaaggtacaaaattgttacagtgttttactgctccagattgtagagagtccctgttttccgctgtttatcaccaggacatgatttttgcgtcataccacggggctcattgtcttaaagtgttcaacaaggaaggggtgtttctgtatgatattggcagtgaggggtctggtgatggtcagttgagttggcccagagggatcgctatcgacaagtttaacaatctgattgtgtctgacagtggtaacaacaggctgcaagtcttcacactggatggaagatttgtaaacacgataaaagaacagatcactgaacttgggtctcctcattctatatctgtgtccaacactggtcaagtgtttgtaactgatgtagccaccaactgtattcatgtattccagtag

Transcript

evm.model.Ap2.2498

ATGTCCGCTATCGAATACCGTAATTTACTGTATGAGATAAGCCGGCAAATCGATTGGTTAACTGAACGACAGCGGTTACTATTTATCTGCGAAGCCGAAGGATTGATTGTGACAGGAAGTGAAAGCAATATCCAAGAAGTCCTCTCTTTGTTTAAAGGGCTGGAGGAGCGGAATCATCTAGGAATCGATCGTCTAGAAGTACTGAAGGATCTTTTAAAAGGCACAGGGAAATGGAATCTCCTAGGATTAGTCGAAAAATTTGAAATCAAAAGAAAAGAGTACAACAATTTACTAGAACAGATTTGCTTTGCACTCGATCAGGGCAACCATCTAGAACGAGTCATTTCAATGTGCAAAGAAAATATATCGTATGACAGGGAAAGAGACTTCAAAGATGTTCGAACACTGTTTACAGAACTAGAAAAACAGAATAACTTGGGAATCGCACGCCTTGACATCTTGAAAAACATTGTGTTAGACGCAGAGAAACCAGACTTGCTTGAACAAATTGTGGAGTTTGAGGAGAAGAGAAAACAGGAGGAAATTGAGGAGAGAAAAAGAGCTGAGTTTGAGGAATCAAGGATAAGAACAAAAGATCAGGCTGTTGCTGTTTTGTCTTCTGCCAAAATTGCTGGAGAGAAGTTATTAGGAACCTTTACACCTCATTGTACTTTCCGTAATGTTGCTGGTGGTATGGTAGTCGTTACTACATGGATGATCCTACGAAGAAGTTCAAATCTCGAAGAATTTGTAAACGCTTTTACAGAAGCAATTCTTCCACTTGGCAATACCCTGCGAGCAATAAGCGAAGGATCTGTGTGCTTCACGATACAGGCTGAAAACAGATCAGCTCTTCAGGCATTGTGGGAACGATACCAGAACGGCACACTGCAAAAAGACCTGCAAGAGTTTCTAGTGACTGAAGATGTTAAACAACTTGCAAATGGCGAGGAAGTGATTTTGACTGTGGAAATTGATGAACAAGAATATAAGAATGCATGTTTAGACCTGAAGGTAGCAGAAACACAAGTTGAAGGTTTTCAAGACGTGGAACTTGGCTCAAAATCTAAGTTTACGTTCGTGACCAGAGATCTTGAAGGACACAAGTTCTATAATGCAGACAATGAGGTAACGGTACTTACACTGGATGGTACTTACACTGTAAGTTTTACACCAGACACTGTAGGTCCGCATAGCGTGTTAATCACAGTTAATGGCCAGCCGCTGACCGGTAGTCCCTGGAGTGTTCAGGTGTCTCCTCATCAGTACAAACAAGTGTTTACATTTGGATCACGTGGCAGTGGACCCGGACAGTTTGATTTGTCTCACGGTGGTTCAATTAACGGCATTTCTATTAACGAGAACACTGACCACATTGCAGTAGCAGACACTCACAATAATAGAGTTCAAATATTTAGTGCAGATGGCTCTTACCTGAGAGAGTTTGGTCAGAGGGGCATTAAAGCTGAACGAGTACGCAGTCCACGCGCAGTTGCGTTCACCAAAAATGGCGACCTTATTGTCTATCATACTGGTAAGATTTCTCTATTCAGTGAGAGTGGTCAGTTTATTAAGCACATCACCAACAAGCACCTAAAGGTTGCAATGAGCTTTTCTTTAGCATCTGATGACAATATCGTCGCGTGCGACTGGGATGACAAGAAAATCAAGGACCTCTCCCCTGAAGGTACAAAATTGTTACAGTGTTTTACTGCTCCAGATTGTAGAGAGTCCCTGTTTTCCGCTGTTTATCACCAGGACATGATTTTTGCGTCATACCACGGGGCTCATTGTCTTAAAGTGTTCAACAAGGAAGGGGTGTTTCTGTATGATATTGGCAGTGAGGGGTCTGGTGATGGTCAGTTGAGTTGGCCCAGAGGGATCGCTATCGACAAGTTTAACAATCTGATTGTGTCTGACAGTGGTAACAACAGGCTGCAAGTCTTCACACTGGATGGAAGATTTGTAAACACGATAAAAGAACAGATCACTGAACTTGGGTCTCCTCATTCTATATCTGTGTCCAACACTGGTCAAGTGTTTGTAACTGATGTAGCCACCAACTGTATTCATGTATTCCAGTAG

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000403 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01436 all species →	NHL	NHL repeat	Repeat	Interproscan
PF20694 all species →	TRADD-like_N	TRADD-like N-terminal domain	Domain	Interproscan
PF00630 all species →	Filamin	Filamin/ABP280 repeat	Domain	Interproscan
PF17170 all species →	DUF5128	6-bladed beta-propeller	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR011029 all species →	Homologous_superfamily	Death-like domain superfamily	Interproscan
IPR001875 all species →	Domain	Death effector domain	Interproscan
IPR001258 all species →	Repeat	NHL repeat	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR049341 all species →	Domain	TRADD-like N-terminal domain	Interproscan
IPR017868 all species →	Repeat	Filamin/ABP280 repeat-like	Interproscan
IPR011042 all species →	Homologous_superfamily	Six-bladed beta-propeller, TolB-like	Interproscan
IPR001298 all species →	Repeat	Filamin/ABP280 repeat	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR10680 all species →	PEPTIDYL-GLYCINE ALPHA-AMIDATING MONOOXYGENASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0042981 all species →	Biological Process	regulation of apoptotic process	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.2498.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.