Gene detail

Detailed information of evm.model.Ap2.2645 in Astrangia poculata

Genomic Location: Ap2:27641450...27649662
NR annotation: XP_020604871.1, uncharacterized protein LOC110043720 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.2645

atggcggcggattccgccgaagcgttgtcgagcgatgctattcaacaacaaatcatggctactgagcaagtgtccgcggctgaagttctccaaaacgctctgtcagcgaacattccaacaactattccaactatttcgcagcaaaatgggggaatcaccaccatttccagttcgactttatccgagacaatgacgactacagaagcgatgatggcgacggagagtatttcagttggtacacaaggggctccggccacgttgagcggacaagaaatcgtggagaatattccgcaagtccagcaacacgagtccgttgttagtgttgcgggaactcaagaaagtttggtcatcacaactgaaaatgttgctattacgaccgctattactacaagcgcttcacttgatgcgtctcagcaaatagtgagtttatccagtgcagtgcaagcgaattatccgtgggccgcccgacttcatgactgcgaacttataggggattcctacaggggatatgtaaccaacgaagtagaactggacttgatcctgacactacacaaacagcataccaacagctgctggggaacaaggcagtccccttcatccgctaaaccgtcaattcgtctgatgtggaaatcacagtatgtaccatatgatgggataccattcttaaatacaggtcgacgagcaacagtaatggaatgtcagtatggaccaagaagaaaaggagcggtcaacaagaaacagcttgactatgatgaacatggtcttcaagtgaaaaggcatcggcctacttgtcctgccaggatttatgtcaagaaagtgcgcaaatttcctgagttcaggatagacccgaatctggaaggaaagaatgtccggcaggcccaggagagggcattaacggcgctgaggttggcaggagtacatgttggtggagaggagaggtactacgttcagctgccacttcccttagctcatgaataccatgacattgatgacattcctctagatcctgacgaaggcgactctcaaggacagcggcttaatcctgaagtcatgcataagatacgagaacttgtcgcaagaggcgtcactggtatctacactgttaaacactgcttgaaggaatatgtggaaaaggaactgtttgttaatttagaacctccgccaagacataacaagtcatatttccccaccatcattgatatccagaatcatattcaccaagcacagatggcacttgctactggtgctcttatgcctcttcccccgctaacaaatcttccaccaagctctcctcaactaaaggagaaaactcgtaagcggaagcatgcaccagaaaaactatcacagtcatctcagacgaccgcagatgcaattgcaagtattcagcagcattatcagtcagcactaccaacaatgttaagcactcaagatcaagaacacttaattcaaaagagtggcagggaaaactaccaaggaactgaagggcaccagcttgagatcatccaaggctctgaaggagaagctactgaagttgatatgtctgctcagccacagatccttatcacccagggctctggtacaggaagggatgaaggtcaagttgttattgttgtgaatgccagcagtttcttctctggtcaatctgattctgagacaccaacgacgctctctttaaccataccagcttcccaagtggctagcttgagccacgcctcgctacactctggggctggttcacaggcggttacattcattccgcatcaaactgacgtagcaacagcagctcagacgtctggatctgctgcaactcctcagacagtcacattcattccgcaatccttagacaacagtcgaggtgctgtggctttcttaacatctcagcagacagataacactagtcaagtgcctgtgtctgcagcttatcttgcggcacatggacagtcaagcaacatcttaagtatgctggactctgcattgcaggcatctagtggagcttctgccccagtgattcgtgttggtacaaatctaggagcagtccagatcgcagataacagccagacacctgaaacagttcctggacaagtattgacagcccaggcagcagttgaagctgttattaatgctgcgactcccagagaagaaacaaaacagtctagtgtaggagatgagaatatcgaaggtgaacctcaagccaagcgccaagcacttggaatggacttttcatcactggtcaaggaagcagtgtttgatagtcaacaggttgaaggagaaactagtgaatgtcaaacagaaagcacatcaaaaactgaacagtcacaaatggttactattcctacatctaccactgcacaggaaaaagaaaacacacaactcagcagtctatcacagaccaatgagagcgggaatttcattaccatggaaacacggccagtcgtcatggtaacagaatcagttctgcagtcaatgcaggatgggcagggaattgtaacagagtaccaggataacaaccattcattactcggaaacggagatgaaaaacttgctgcacagactgcccagtgttatgcacctcccgagcaagccacagtgcaaccaccacaaactgatacatcgtacgcaaccaatataccttcgcatgaaatcccccaggaagtctcagtctctatggatacggcttctgaagaagctaacgaacacttaccttcatatgagaacagtttgaaggcggcagaaggagagcagagtatacaagattatagtatgcacactccatgtacggaaactgtcaacaacagtgaacaaatgaatgtgtcgcttacgtttgaaagtggccaacagttgactgaggaggaagctccaagtgtacctcactcaaatgcagtttccacagtaaataacacaacagcagtttttacacagtaa

Transcript

evm.model.Ap2.2645

ATGGCGGCGGATTCCGCCGAAGCGTTGTCGAGCGATGCTATTCAACAACAAATCATGGCTACTGAGCAAGTGTCCGCGGCTGAAGTTCTCCAAAACGCTCTGTCAGCGAACATTCCAACAACTATTCCAACTATTTCGCAGCAAAATGGGGGAATCACCACCATTTCCAGTTCGACTTTATCCGAGACAATGACGACTACAGAAGCGATGATGGCGACGGAGAGTATTTCAGTTGGTACACAAGGGGCTCCGGCCACGTTGAGCGGACAAGAAATCGTGGAGAATATTCCGCAAGTCCAGCAACACGAGTCCGTTGTTAGTGTTGCGGGAACTCAAGAAAGTTTGGTCATCACAACTGAAAATGTTGCTATTACGACCGCTATTACTACAAGCGCTTCACTTGATGCGTCTCAGCAAATAGTGAGTTTATCCAGTGCAGTGCAAGCGAATTATCCGTGGGCCGCCCGACTTCATGACTGCGAACTTATAGGGGATTCCTACAGGGGATATGTAACCAACGAAGTAGAACTGGACTTGATCCTGACACTACACAAACAGCATACCAACAGCTGCTGGGGAACAAGGCAGTCCCCTTCATCCGCTAAACCGTCAATTCGTCTGATGTGGAAATCACAGTATGTACCATATGATGGGATACCATTCTTAAATACAGGTCGACGAGCAACAGTAATGGAATGTCAGTATGGACCAAGAAGAAAAGGAGCGGTCAACAAGAAACAGCTTGACTATGATGAACATGGTCTTCAAGTGAAAAGGCATCGGCCTACTTGTCCTGCCAGGATTTATGTCAAGAAAGTGCGCAAATTTCCTGAGTTCAGGATAGACCCGAATCTGGAAGGAAAGAATGTCCGGCAGGCCCAGGAGAGGGCATTAACGGCGCTGAGGTTGGCAGGAGTACATGTTGGTGGAGAGGAGAGGTACTACGTTCAGCTGCCACTTCCCTTAGCTCATGAATACCATGACATTGATGACATTCCTCTAGATCCTGACGAAGGCGACTCTCAAGGACAGCGGCTTAATCCTGAAGTCATGCATAAGATACGAGAACTTGTCGCAAGAGGCGTCACTGGTATCTACACTGTTAAACACTGCTTGAAGGAATATGTGGAAAAGGAACTGTTTGTTAATTTAGAACCTCCGCCAAGACATAACAAGTCATATTTCCCCACCATCATTGATATCCAGAATCATATTCACCAAGCACAGATGGCACTTGCTACTGGTGCTCTTATGCCTCTTCCCCCGCTAACAAATCTTCCACCAAGCTCTCCTCAACTAAAGGAGAAAACTCGTAAGCGGAAGCATGCACCAGAAAAACTATCACAGTCATCTCAGACGACCGCAGATGCAATTGCAAGTATTCAGCAGCATTATCAGTCAGCACTACCAACAATGTTAAGCACTCAAGATCAAGAACACTTAATTCAAAAGAGTGGCAGGGAAAACTACCAAGGAACTGAAGGGCACCAGCTTGAGATCATCCAAGGCTCTGAAGGAGAAGCTACTGAAGTTGATATGTCTGCTCAGCCACAGATCCTTATCACCCAGGGCTCTGGTACAGGAAGGGATGAAGGTCAAGTTGTTATTGTTGTGAATGCCAGCAGTTTCTTCTCTGGTCAATCTGATTCTGAGACACCAACGACGCTCTCTTTAACCATACCAGCTTCCCAAGTGGCTAGCTTGAGCCACGCCTCGCTACACTCTGGGGCTGGTTCACAGGCGGTTACATTCATTCCGCATCAAACTGACGTAGCAACAGCAGCTCAGACGTCTGGATCTGCTGCAACTCCTCAGACAGTCACATTCATTCCGCAATCCTTAGACAACAGTCGAGGTGCTGTGGCTTTCTTAACATCTCAGCAGACAGATAACACTAGTCAAGTGCCTGTGTCTGCAGCTTATCTTGCGGCACATGGACAGTCAAGCAACATCTTAAGTATGCTGGACTCTGCATTGCAGGCATCTAGTGGAGCTTCTGCCCCAGTGATTCGTGTTGGTACAAATCTAGGAGCAGTCCAGATCGCAGATAACAGCCAGACACCTGAAACAGTTCCTGGACAAGTATTGACAGCCCAGGCAGCAGTTGAAGCTGTTATTAATGCTGCGACTCCCAGAGAAGAAACAAAACAGTCTAGTGTAGGAGATGAGAATATCGAAGGTGAACCTCAAGCCAAGCGCCAAGCACTTGGAATGGACTTTTCATCACTGGTCAAGGAAGCAGTGTTTGATAGTCAACAGGTTGAAGGAGAAACTAGTGAATGTCAAACAGAAAGCACATCAAAAACTGAACAGTCACAAATGGTTACTATTCCTACATCTACCACTGCACAGGAAAAAGAAAACACACAACTCAGCAGTCTATCACAGACCAATGAGAGCGGGAATTTCATTACCATGGAAACACGGCCAGTCGTCATGGTAACAGAATCAGTTCTGCAGTCAATGCAGGATGGGCAGGGAATTGTAACAGAGTACCAGGATAACAACCATTCATTACTCGGAAACGGAGATGAAAAACTTGCTGCACAGACTGCCCAGTGTTATGCACCTCCCGAGCAAGCCACAGTGCAACCACCACAAACTGATACATCGTACGCAACCAATATACCTTCGCATGAAATCCCCCAGGAAGTCTCAGTCTCTATGGATACGGCTTCTGAAGAAGCTAACGAACACTTACCTTCATATGAGAACAGTTTGAAGGCGGCAGAAGGAGAGCAGAGTATACAAGATTATAGTATGCACACTCCATGTACGGAAACTGTCAACAACAGTGAACAAATGAATGTGTCGCTTACGTTTGAAAGTGGCCAACAGTTGACTGAGGAGGAAGCTCCAAGTGTACCTCACTCAAATGCAGTTTCCACAGTAAATAACACAACAGCAGTTTTTACACAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D4A7U2	Calcium-responsive transcription factor OS=Rattus norvegicus OX=10116 GN=Carf PE=1 SV=1
Q8VHI4	Calcium-responsive transcription factor OS=Mus musculus OX=10090 GN=Carf PE=2 SV=1
Q8N187	Calcium-responsive transcription factor OS=Homo sapiens OX=9606 GN=CARF PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006847 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF15299 all species →	ALS2CR8	Amyotrophic lateral sclerosis 2 chromosomal region candidate gene 8	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029309 all species →	Family	Calcium-responsive transcription factor	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR14694 all species →	CALCIUM-RESPONSIVE TRANSCRIPTION FACTOR	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0003700 all species →	Molecular Function	DNA-binding transcription factor activity	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.2645.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.