Detailed information of evm.model.Ap2.265 in Astrangia poculata

Genomic Location: Ap2:2437143...2438283
NR annotation: XP_020614348.1, HIG1 domain family member 2A, mitochondrial-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q9BW72HIG1 domain family member 2A, mitochondrial OS=Homo sapiens OX=9606 GN=HIGD2A PE=1 SV=1
Q9CQJ1HIG1 domain family member 2A OS=Mus musculus OX=10090 GN=Higd2a PE=3 SV=1
Q4VC39HIG1 domain family member 2B OS=Homo sapiens OX=9606 GN=HIGD2B PE=1 SV=1
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0002836 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04588
all species →		HIG_1_NHypoxia induced protein conserved regionFamilyInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007667
all species →		DomainHypoxia induced protein, domainInterproscan
IPR050355
all species →		FamilyMitochondrial Respiratory Supercomplex Factor 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR12297
all species →		HYPOXIA-INDUCBILE GENE 1 HIG1 -RELATEDInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0005739
all species →		Cellular ComponentmitochondrionInterproscan
GO:0097250
all species →		Biological Processmitochondrial respirasome assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap2.265.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.

Expression pattern (RNA-seq)

Transcript abundance of evm.model.Ap2.265 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.

49Samples
0TPM > 0
4Conditions
0.0Max TPM
0.0Mean TPM

By condition

ConditionSamplesTPM > 0 Mean TPMMax TPMMean, relative to max
whole organism · cold control 14 0 0.00 0.00
whole organism · heat control 12 0 0.00 0.00
whole organism · cold challenge 12 0 0.00 0.00
whole organism · heat challenge 11 0 0.00 0.00

Per sample · hover a bar for the full sample record · show / hide the sample table

Source: CnidoSite RNA-seq expression matrices (APOCU_TPM, StringTie quantification over 49 runs), joined to SRA sample metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped by the descriptor carried in the expression matrix itself.

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