Gene detail

Detailed information of evm.model.Ap2.2679 in Astrangia poculata

Genomic Location: Ap2:28128452...28131331
NR annotation: XP_020604760.1, methyl-CpG-binding domain protein 4-like isoform X1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9Z2D7	Methyl-CpG-binding domain protein 4 OS=Mus musculus OX=10090 GN=Mbd4 PE=1 SV=1
O95243	Methyl-CpG-binding domain protein 4 OS=Homo sapiens OX=9606 GN=MBD4 PE=1 SV=1
Q0IGK1	Methyl-CpG-binding domain protein 4-like protein OS=Arabidopsis thaliana OX=3702 GN=MBD4L PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0007695 (this species only)
Transcription factor family	MBD · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01429 all species →	MBD	Methyl-CpG binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR001739 all species →	Domain	Methyl-CpG DNA binding	Interproscan
IPR045138 all species →	Family	Methyl-CpG binding protein MeCP2/MBD4	Interproscan
IPR011257 all species →	Homologous_superfamily	DNA glycosylase	Interproscan
IPR016177 all species →	Homologous_superfamily	DNA-binding domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15074 all species →	METHYL-CPG-BINDING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003677 all species →	Molecular Function	DNA binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0006281 all species →	Biological Process	DNA repair	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K10801	MBD4; methyl-CpG-binding domain protein 4	EC:3.2.2.-	DNA repair and recombination proteins	ko03400	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.