Genomic Location: Ap2:29192040...29206117
NR annotation: XP_020606641.1, protein PAT1 homolog 1-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap2.2850 |
| Transcript |
| evm.model.Ap2.2850 |
| Protein |
| evm.model.Ap2.2850 |
| UniProt accession | Description |
|---|---|
| Q3TC46 | Protein PAT1 homolog 1 OS=Mus musculus OX=10090 GN=Patl1 PE=1 SV=2 |
| Q5R8Q4 | Protein PAT1 homolog 1 OS=Pongo abelii OX=9601 GN=PATL1 PE=2 SV=1 |
| A2RRV3 | Protein PAT1 homolog 1 OS=Danio rerio OX=7955 GN=patl1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0004039 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF09770 all species → | PAT1 | Topoisomerase II-associated protein PAT1 | Repeat | Interproscan |
| PF01391 all species → | Collagen | Collagen triple helix repeat (20 copies) | Repeat | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR039900 all species → | Family | Pat1-like | Interproscan |
| IPR019167 all species → | Domain | mRNA decay factor PAT1 domain | Interproscan |
| IPR008160 all species → | Repeat | Collagen triple helix repeat | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR21551 all species → | TOPOISOMERASE II-ASSOCIATED PROTEIN PAT1 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0000290 all species → | Biological Process | deadenylation-dependent decapping of nuclear-transcribed mRNA | Interproscan |
| GO:0000932 all species → | Cellular Component | P-body | Interproscan |
| GO:0003723 all species → | Molecular Function | RNA binding | Interproscan |
| GO:0033962 all species → | Biological Process | P-body assembly | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K12617 | PATL1, PAT1; DNA topoisomerase 2-associated protein PAT1 | - | Messenger RNA biogenesis | ko03019 | deepkoala |
Transcript abundance of evm.model.Ap2.2850 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
