Gene detail

Detailed information of evm.model.Ap2.2902 in Astrangia poculata

Genomic Location: Ap2:29548283...29561927
NR annotation: XP_020601867.1, paladin-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.2902

atgggaaccggagctagcagtggtggatcgcaagcgggctcaaacccaaatgtgaaagaaggctccacaccgtcgaccgaggacaaatcgtcatcgaggaaagcgtcttctatctcgaaaaaacactcaaacggtttcataacattaagttatgaaccgacaaatacaccgcttattcgaaagcggggcttcatcaagcagggatttcccgtccacggacttattcaagacaaatattttctaataaaagatcactttgatggaatcgacaagctcaagaccttagacgagtatggggcaccgaattttcgcaagagtcgcggaccctatccggtttacggaatgggtcaaccgtcaagggatggactagctcacgttatacaatctttggttgaaaatgggcacaaggaaatagtgtcgtttaacttgcgagaggagccagtgatatttgtaggaatgaatcatgactttgtgccttactctccccgggaccccagcagcctgaaaggtaacattgctaatcatggagtaaaacctgaggagctcgctgaaacagaactcaaaataagagaagagataattaggttttcaatcgacgaaggtgggaaattttatttttacaataacgtggaaacattcgaagacgagccgcacacatacaaggttgcttatgaagaagacttatgcgtgctggatgagatctatagcagacagatctttctcactcctttcctgaggtattctcggatcccaatcacggccacaaatgctcccgaggagcaagactttgaccagttcatcagcgccattaaagacatctctcagttgtttgacaacaactcgtcagctcctttgccggccatggtattcaactgtcatgtcggccagggtcgtaccaccactggcatggtgattggctgtttaatcatgtcacaccggactggcttcccatcagaggcacacacgattccataccctgtcgacgaaaacaatccaaacctggagagaggagaatttagaataattctacagctcgtaaaaaatcttcccagtggcagacaaattaaacaagaggtggattctgtgattgacatctgttctgacgtcatgaacttgcggtccgtcagttatgagtgcaagtgtaaactggaagagattaaggatgattataaaatcgagggtcaaagtgcacgtgaatactggttaagacgaggcctgagtgctttggaacgatacttctttttaatcctcttcaatgcatacttacaccagcagtttcctctcatgttttcacaaacgttccggaagtggatgcaacagaggccttggctctacagaatgctgagtcatattgacgtcatggagaagggagtgacgtcagaattcacgtccaaatacaaaaatcaaacttgcctggttgctgatgaacaagttagtcttgatgttctgagtacccagcgggaatttgaggtttcaaatttccggaaagttcccggattcccggtttatggcatgtgccaaccatcaagacaggggctgtaccgtgtttcaagctatcttcttggtccaaaatgcctccatcccaaagttgtttttctcaacttaagagaagacctcgctgtcgactgtgatgggagcacgtttagtcctagagagcttttgaatttgacggagcatatgccttttagaggactggatactagtgaagtcgagcacaaggagaatgaattgaaatcagaattattaaagagaggaaagaaacaagccacgcaggtctacagagatcttaaaagcgcgccggaagaacacgagtttaacagtatactgaccatgcgagaggcagcagagctatgcatggcaaagaatccacagaccttgtattttagaatgccattaccagaagacaaagcacccgaggagaaggactttgatcgcatattatcaatccttaacaacctacacgagatctacacagatgaagacggtcctgctattgtttttaactgcgagttaggcaagggtagaacaaccacaggcatggcaattgctgcacttatttactgcaacaagaagggttttcctgttggtaccaaagtcgatgagcaagatccagcttgtgtcccgaatgcaaagtacacactgggcgagttttcggttattcgccaccttaaaagagttcttcccagcggtccgcaaaggaagcgagaggttgactatgtacttgacagaatctcggagaccatgacccccatgcattatcattcaagagaggttatcttctccacttttaatttgtatcgcaatggcgttgtgccaccgtggaaattccagaacttcggaaaagaagcctttacttgttggagagatatttctatcttatcctgtttaacacgtaccttcacatggagagaagaaccaaatggcagcgttcgtttagtcaatggatga

Transcript

evm.model.Ap2.2902

ATGGGAACCGGAGCTAGCAGTGGTGGATCGCAAGCGGGCTCAAACCCAAATGTGAAAGAAGGCTCCACACCGTCGACCGAGGACAAATCGTCATCGAGGAAAGCGTCTTCTATCTCGAAAAAACACTCAAACGGTTTCATAACATTAAGTTATGAACCGACAAATACACCGCTTATTCGAAAGCGGGGCTTCATCAAGCAGGGATTTCCCGTCCACGGACTTATTCAAGACAAATATTTTCTAATAAAAGATCACTTTGATGGAATCGACAAGCTCAAGACCTTAGACGAGTATGGGGCACCGAATTTTCGCAAGAGTCGCGGACCCTATCCGGTTTACGGAATGGGTCAACCGTCAAGGGATGGACTAGCTCACGTTATACAATCTTTGGTTGAAAATGGGCACAAGGAAATAGTGTCGTTTAACTTGCGAGAGGAGCCAGTGATATTTGTAGGAATGAATCATGACTTTGTGCCTTACTCTCCCCGGGACCCCAGCAGCCTGAAAGGTAACATTGCTAATCATGGAGTAAAACCTGAGGAGCTCGCTGAAACAGAACTCAAAATAAGAGAAGAGATAATTAGGTTTTCAATCGACGAAGGTGGGAAATTTTATTTTTACAATAACGTGGAAACATTCGAAGACGAGCCGCACACATACAAGGTTGCTTATGAAGAAGACTTATGCGTGCTGGATGAGATCTATAGCAGACAGATCTTTCTCACTCCTTTCCTGAGGTATTCTCGGATCCCAATCACGGCCACAAATGCTCCCGAGGAGCAAGACTTTGACCAGTTCATCAGCGCCATTAAAGACATCTCTCAGTTGTTTGACAACAACTCGTCAGCTCCTTTGCCGGCCATGGTATTCAACTGTCATGTCGGCCAGGGTCGTACCACCACTGGCATGGTGATTGGCTGTTTAATCATGTCACACCGGACTGGCTTCCCATCAGAGGCACACACGATTCCATACCCTGTCGACGAAAACAATCCAAACCTGGAGAGAGGAGAATTTAGAATAATTCTACAGCTCGTAAAAAATCTTCCCAGTGGCAGACAAATTAAACAAGAGGTGGATTCTGTGATTGACATCTGTTCTGACGTCATGAACTTGCGGTCCGTCAGTTATGAGTGCAAGTGTAAACTGGAAGAGATTAAGGATGATTATAAAATCGAGGGTCAAAGTGCACGTGAATACTGGTTAAGACGAGGCCTGAGTGCTTTGGAACGATACTTCTTTTTAATCCTCTTCAATGCATACTTACACCAGCAGTTTCCTCTCATGTTTTCACAAACGTTCCGGAAGTGGATGCAACAGAGGCCTTGGCTCTACAGAATGCTGAGTCATATTGACGTCATGGAGAAGGGAGTGACGTCAGAATTCACGTCCAAATACAAAAATCAAACTTGCCTGGTTGCTGATGAACAAGTTAGTCTTGATGTTCTGAGTACCCAGCGGGAATTTGAGGTTTCAAATTTCCGGAAAGTTCCCGGATTCCCGGTTTATGGCATGTGCCAACCATCAAGACAGGGGCTGTACCGTGTTTCAAGCTATCTTCTTGGTCCAAAATGCCTCCATCCCAAAGTTGTTTTTCTCAACTTAAGAGAAGACCTCGCTGTCGACTGTGATGGGAGCACGTTTAGTCCTAGAGAGCTTTTGAATTTGACGGAGCATATGCCTTTTAGAGGACTGGATACTAGTGAAGTCGAGCACAAGGAGAATGAATTGAAATCAGAATTATTAAAGAGAGGAAAGAAACAAGCCACGCAGGTCTACAGAGATCTTAAAAGCGCGCCGGAAGAACACGAGTTTAACAGTATACTGACCATGCGAGAGGCAGCAGAGCTATGCATGGCAAAGAATCCACAGACCTTGTATTTTAGAATGCCATTACCAGAAGACAAAGCACCCGAGGAGAAGGACTTTGATCGCATATTATCAATCCTTAACAACCTACACGAGATCTACACAGATGAAGACGGTCCTGCTATTGTTTTTAACTGCGAGTTAGGCAAGGGTAGAACAACCACAGGCATGGCAATTGCTGCACTTATTTACTGCAACAAGAAGGGTTTTCCTGTTGGTACCAAAGTCGATGAGCAAGATCCAGCTTGTGTCCCGAATGCAAAGTACACACTGGGCGAGTTTTCGGTTATTCGCCACCTTAAAAGAGTTCTTCCCAGCGGTCCGCAAAGGAAGCGAGAGGTTGACTATGTACTTGACAGAATCTCGGAGACCATGACCCCCATGCATTATCATTCAAGAGAGGTTATCTTCTCCACTTTTAATTTGTATCGCAATGGCGTTGTGCCACCGTGGAAATTCCAGAACTTCGGAAAAGAAGCCTTTACTTGTTGGAGAGATATTTCTATCTTATCCTGTTTAACACGTACCTTCACATGGAGAGAAGAACCAAATGGCAGCGTTCGTTTAGTCAATGGATGACTGAAGTTGCAACCGCTGCAGGCGTTTATGAAATTCTCGACAACTTTGGATTCCACGATTTTGAGAAGACAGAGGAACGCTTGCGCGCCCTGCGCTGGAGATGGCGGGAAAGTTACAAGGGGAAGCCGTCAAATTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DIR8	Paladin OS=Xenopus tropicalis OX=8364 GN=pald1 PE=2 SV=1
Q8JHZ8	Paladin OS=Gallus gallus OX=9031 GN=PALD1 PE=2 SV=2
Q803E0	Paladin OS=Danio rerio OX=7955 GN=pald1 PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0008381 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF14566 all species →	PTPlike_phytase	Inositol hexakisphosphate	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029021 all species →	Homologous_superfamily	Protein-tyrosine phosphatase-like	Interproscan
IPR003595 all species →	Domain	Protein-tyrosine phosphatase, catalytic	Interproscan
IPR050561 all species →	Family	Protein Tyrosine Phosphatase	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR23339 all species →	TYROSINE SPECIFIC PROTEIN PHOSPHATASE AND DUAL SPECIFICITY PROTEIN PHOSPHATASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004725 all species →	Molecular Function	protein tyrosine phosphatase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.2902.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.