Genomic Location: Ap2:29766569...29793239
NR annotation: XP_020601919.1, small subunit processome component 20 homolog [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap2.2927 |
| Transcript |
| evm.model.Ap2.2927 |
| Protein |
| evm.model.Ap2.2927 |
| UniProt accession | Description |
|---|---|
| O75691 | Small subunit processome component 20 homolog OS=Homo sapiens OX=9606 GN=UTP20 PE=1 SV=3 |
| Q5XG71 | Small subunit processome component 20 homolog OS=Mus musculus OX=10090 GN=Utp20 PE=1 SV=2 |
| O60055 | U3 small nucleolar RNA-associated protein 20 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=utp20 PE=3 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0002640 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF20416 all species → | UTP20_C | U3 small nucleolar RNA-associated protein 20, C-terminal | Domain | Interproscan |
| PF07539 all species → | UTP20_N | U3 small nucleolar RNA-associated protein 20, N-terminal | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR046523 all species → | Domain | U3 small nucleolar RNA-associated protein 20, C-terminal | Interproscan |
| IPR011989 all species → | Homologous_superfamily | Armadillo-like helical | Interproscan |
| IPR016024 all species → | Homologous_superfamily | Armadillo-type fold | Interproscan |
| IPR011430 all species → | Domain | U3 small nucleolar RNA-associated protein 20, N-terminal | Interproscan |
| IPR052575 all species → | Family | Small subunit processome component 20 | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR17695 all species → | UNCHARACTERIZED | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005730 all species → | Cellular Component | nucleolus | Interproscan |
| GO:0030686 all species → | Cellular Component | 90S preribosome | Interproscan |
| GO:0032040 all species → | Cellular Component | small-subunit processome | Interproscan |
| KO | Enzyme | Enzyme ID | Pathway | Map ID | Source |
|---|---|---|---|---|---|
| K14772 | UTP20; U3 small nucleolar RNA-associated protein 20 | - | Ribosome biogenesis | ko03009 | deepkoala |
Transcript abundance of evm.model.Ap2.2927 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
