Gene detail

Detailed information of evm.model.Ap2.2940 in Astrangia poculata

Genomic Location: Ap2:29909863...29960424
NR annotation: XP_027045710.1, cartilage intermediate layer protein 1-like [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.2940

atgacacctgaaataactactacagaagcagcagaaataacaacaacagatgtctctcagtctcagacacggaaagggttctgcccaatatttgaggctccctctgaatgtcccgaagaagtcgacaacttttgtcaggaagattctaactgtccactgggtctgaagtgttgtaacacgggctgtgaactcgattgcgttggaccaatataccatgatccacttgtaactccagcacctgaaataactactacagaagcagcagaaataacaacaacagatgtctctcagtctcagacacggaaagagttctgcccaatatttgaggctccctctgaatgtcccgaagtagtcgacaacttttgtcaggaagattctaactgtccactgggtctgaagtgttgtaacacgggctgtgaactcgattgcgttcaaccaatataccatgatccccttgtaactccagaagtaactactacagatgttccagacgtaactactacagatgaagtaattactacagatgtttcagaagtaactactacagatgaagtaactactacagatgaagtaactactacagatgaagtaactactacagatgaagtaactactacagatgaagtaactactacagatgttccagacgtaactactacagatgaagtaactactacagatgaagtaactactacagatgttccagacgtaactactacagatgaagtaactactacagatgacgtaactaccacagatgttccagacgtaactactacagatgaagtaactactacatatgaagtaactactacagatgttccagacgtaactactacagatgaagtaactactacagatgaagtaactactacagaagtgaatgcgtgcacaagaaatccttgcaagaatggaggaagatgtacagtaactggaagtaatagatacagttgtcagtgtaccgtggggtattatggggacatttgtcacaaagtgagcccttgtaactcaagtccgtgtaagaatggtgcaacctgtactatgactggtgaggattcatactcatgcaactgtactgaggagtttgaaggagaaacatgcgagtcaagacttccatgtccacctggaaaaaagacagatgatcctcaaggtcgctgttgtgtgtttccttttgtgtttaatgggacgtcttacaactcctgtgccaatacaactgatcaacacaaattgtggtgttcacttgatgccgtctacgctggagtatgggctgaatgcgtggatccgtgcacaaacaatacttgccagaatggaggaagatgtacagtaactggtgacgatagttacagttgtcaatgtactgcgtggtattatggggacagttgtgagaaagtgaatgcgtgcacgagcaatccttgccagaatggaggaagatgtacagtagctggagacgatagttacagttgtcaatgtacttcatggtattatggagaaaattgtgataaagtgaatgcgtgcacaagcaatccttgcaagaatggaggaagatgtacagtaactggaagtaatagttacagttgtcaatgtaccgtggggtattatggggacatttgtcacaaagtgaatgcgtgcacgagcaatccttgcaaaaatggaggaagatgtacagtaactggagatgatagatacagttgtcattgtactgcagggtattatgggaacaattgtgaaaaagtgaatgcgtgcacaagaaatccttgccggaatggaggaagatgtacaataactggagataatagatacagttgtcggtgtaccatagggtattatggggacgattgtgaaaaagtgaatgcgtgcacaagcaatccttgccggaatggaggaagatgtatagtaactggagatgatagatactattgtcagtgtaccgtggggtattatggggacgattgtgaaaaagcgaacttgtgctcgcggaccttctgcaaaaaaggaaagatgtgcgttgacacaggggtgaccacgaaatgtgtatgcccaacatcctgtacaaatgaaaaccttcccgtttgcagtgtttaccatgtgcagttctcaaatctttgtgagttacacaggtttgcttgtgcaaatgaaacccacattcaagtaaaacacctaggaaattgcaccgaacaagaggctaagtcagcttgcagtaagacaggaatcatcaattttcaagacaagtatttgcaaacatacaaggccaaacgagtgctttctttggttcagaggctgaattattcaaagctggcctttgacgacttctgggatagaaatagaagcggaatgttggaagaagatgaaattcgtcgagagttgataaagtctaacgatacatgcttaacagggcttattagatcgtgtgacaatgatgggaatccaggaataagcaaacaagagtggttcacctgcttcaaaacggaagggggtcagtggcgctggtcaccatggactgactgttcggtcacgtgtggaggtggtcggcaaagacgaactggcacctgcgttttacccagctcaggacaaaaactagaaagacggctgtgtgacggacgtcatcatgaaacaagaaactgttccaacggagagtgtcccgactggatgagttcagttaccactgatgggaaatggagccgctggtcaccgtggactgactgctcactctcttgtggaaaaggtcgtcagagtagaacacgcatctgcaacgatacagtcactggaaaatccctcaagaatggctggtgtgctggaaaaccacaacaagaaaaaacatgcgctgactggaaatgtccagatggaagaaaggcaaggtgtccaggatataagaaagttactctgaagggccgagtgttgtctttgcgtgatatacctcttgctggagctaatatatcactggccgaatctccttataaaatcctgtctcggagtcgagaaaatggcttctttgaagttaacgcattctgcgtcgaaaaaggaaaccctcttttgatcaccaggcatggatacatccctcaacgtgtcaacattacaaacgcaaagtctgtgttaaaagttgaaatggagaatgcagttcacccaacggtgacatcccacccagaggacaggagacgcttcgttggacaagatgtaacattttgctgccaagtggaaggaaatccgccaccagttatagaatggtttaggaatggaaacatcttggataaagaagaatttaacaacaatgaaacgttagtgctacgaaaagtggggaaaaaaatggccggagactttagatgtcgcgcagtaaacgaatttggatcagaattttcggaatcagcggtattaaaagttcttgatccagttattgacacatgcaatcctacgccgtccgaccattttgttacacttcctgacggatgcctcgaagataacactggaaacaataaggttaacattggaaagtgcaatgaccatccatgtttgagagctggcacacagttcccagagttatgtgacgaggcggagcgttgttgccagcccggaaaagtgaatgatacaaccgttctttgcggtaaagatggtaaagggcagtttcaaatggaaaaagtggtgagctgcaggtgtgatgtttgcaacgaaaggaacaccattgtaaaaggagttgtagtcggtggacctgatgaaagaccagtggaatattgcgacattctggtcaacgatacagttgttacatattccgattatgacgggacgtttgaaatacctgtgcacaagtctgcaaagcgactggtggcgacatttcgagattacatggaagaattcgcagaatcaacggtggtgcttcctttccggaaaggtacaactacgtttcacaaaattcaccttcgcccggaagcagaaccaatcgaattctacgcggaagaaaagaagacagtgtcgatttcaaaagatggagcagcagaggtaatcataccagcaaacagtttgcttgacaagaacggaaatccccaaaaaggcaaagctaaagtaaaagtacagttcaacgatcccaggaacgagcgagacattctggaatcacctggcgattttactaccgtagacgaggatggtgaagaacaattgcttagaacatatggcgttttcaagattaaactacaagacgaaaataaccaaaacctaggcctcactaagagtctttatcttaacattgatcttgagaaactgtctggagaggtattcgacgagtctgcacccatacctcatttgtggtggctggatgaaaaaaccggcaggtgggtggacgcaggcgaacttaaacgaaacgaagaaataacaggacgcccgaagagaaatttaccccccggacaggtttttgcaatacttgcacccgagagcattggacaaatatacaacatcgatataattgaagaacgctgctttgctaaggttaaggcttatgcacaaggcgaaggaatacaaaatgcaaaagtcactagtattttcataaatccggagggcccggtatttcaagggtactgtaacgaattcactgactcagatggtaatgcatgcatcccgactcagtgcaacagcgttgggtatctcgaagtggagaaagatggattgcctttgtttcctaaagacaaagaagtggctcgccttccttcccaaacacaagcttccattgtagacaaggtaaaatgtaacttttgtgaaaaaactaagataagaatcaaatttaatacaggcgcaccacagaccagcaatggacctgtttaccagagaagccaattaaattcatgtcgggatcagagcgcggatcagagcttctcgtttcatctacacgacaagcaagaagtcttcaagatagagtacagaccactaagcaagatagagcaaaggtcgcgtaatttgagaaaatgctttgtgaagatcttgacttctggaggggggaaacgtaccctagtgaaggcagagagcttttctaaagatggaaaaacaaagctcggagaaacgattaaacagaccgaacaagtcaataatgataacttatatgtagcatgcttagagtacagttgtcccaaaggaaaaaagaaattaatgcgggttacagctttaacaggagaatttaaaaaaagtaaggtgcaaaaatacttgctggaccagcaggacgcggaggaccagaaggtggcgggaaaaaatgatgaggaaaacgtgaggagcgttgtaatgccaaaacttgggacaatgactggctctaaatttggaattttcgaatggttgttccacggtacagaaaatttaaaggatttagaggacaagtgccttaaatcggacaaagcagagttcgcagtaaaatttgaaatgtag

Transcript

evm.model.Ap2.2940

ATGACACCTGAAATAACTACTACAGAAGCAGCAGAAATAACAACAACAGATGTCTCTCAGTCTCAGACACGGAAAGGGTTCTGCCCAATATTTGAGGCTCCCTCTGAATGTCCCGAAGAAGTCGACAACTTTTGTCAGGAAGATTCTAACTGTCCACTGGGTCTGAAGTGTTGTAACACGGGCTGTGAACTCGATTGCGTTGGACCAATATACCATGATCCACTTGTAACTCCAGCACCTGAAATAACTACTACAGAAGCAGCAGAAATAACAACAACAGATGTCTCTCAGTCTCAGACACGGAAAGAGTTCTGCCCAATATTTGAGGCTCCCTCTGAATGTCCCGAAGTAGTCGACAACTTTTGTCAGGAAGATTCTAACTGTCCACTGGGTCTGAAGTGTTGTAACACGGGCTGTGAACTCGATTGCGTTCAACCAATATACCATGATCCCCTTGTAACTCCAGAAGTAACTACTACAGATGTTCCAGACGTAACTACTACAGATGAAGTAATTACTACAGATGTTTCAGAAGTAACTACTACAGATGAAGTAACTACTACAGATGAAGTAACTACTACAGATGAAGTAACTACTACAGATGAAGTAACTACTACAGATGAAGTAACTACTACAGATGTTCCAGACGTAACTACTACAGATGAAGTAACTACTACAGATGAAGTAACTACTACAGATGTTCCAGACGTAACTACTACAGATGAAGTAACTACTACAGATGACGTAACTACCACAGATGTTCCAGACGTAACTACTACAGATGAAGTAACTACTACATATGAAGTAACTACTACAGATGTTCCAGACGTAACTACTACAGATGAAGTAACTACTACAGATGAAGTAACTACTACAGAAGTGAATGCGTGCACAAGAAATCCTTGCAAGAATGGAGGAAGATGTACAGTAACTGGAAGTAATAGATACAGTTGTCAGTGTACCGTGGGGTATTATGGGGACATTTGTCACAAAGTGAGCCCTTGTAACTCAAGTCCGTGTAAGAATGGTGCAACCTGTACTATGACTGGTGAGGATTCATACTCATGCAACTGTACTGAGGAGTTTGAAGGAGAAACATGCGAGTCAAGACTTCCATGTCCACCTGGAAAAAAGACAGATGATCCTCAAGGTCGCTGTTGTGTGTTTCCTTTTGTGTTTAATGGGACGTCTTACAACTCCTGTGCCAATACAACTGATCAACACAAATTGTGGTGTTCACTTGATGCCGTCTACGCTGGAGTATGGGCTGAATGCGTGGATCCGTGCACAAACAATACTTGCCAGAATGGAGGAAGATGTACAGTAACTGGTGACGATAGTTACAGTTGTCAATGTACTGCGTGGTATTATGGGGACAGTTGTGAGAAAGTGAATGCGTGCACGAGCAATCCTTGCCAGAATGGAGGAAGATGTACAGTAGCTGGAGACGATAGTTACAGTTGTCAATGTACTTCATGGTATTATGGAGAAAATTGTGATAAAGTGAATGCGTGCACAAGCAATCCTTGCAAGAATGGAGGAAGATGTACAGTAACTGGAAGTAATAGTTACAGTTGTCAATGTACCGTGGGGTATTATGGGGACATTTGTCACAAAGTGAATGCGTGCACGAGCAATCCTTGCAAAAATGGAGGAAGATGTACAGTAACTGGAGATGATAGATACAGTTGTCATTGTACTGCAGGGTATTATGGGAACAATTGTGAAAAAGTGAATGCGTGCACAAGAAATCCTTGCCGGAATGGAGGAAGATGTACAATAACTGGAGATAATAGATACAGTTGTCGGTGTACCATAGGGTATTATGGGGACGATTGTGAAAAAGTGAATGCGTGCACAAGCAATCCTTGCCGGAATGGAGGAAGATGTATAGTAACTGGAGATGATAGATACTATTGTCAGTGTACCGTGGGGTATTATGGGGACGATTGTGAAAAAGCGAACTTGTGCTCGCGGACCTTCTGCAAAAAAGGAAAGATGTGCGTTGACACAGGGGTGACCACGAAATGTGTATGCCCAACATCCTGTACAAATGAAAACCTTCCCGTTTGCAGTGTTTACCATGTGCAGTTCTCAAATCTTTGTGAGTTACACAGGTTTGCTTGTGCAAATGAAACCCACATTCAAGTAAAACACCTAGGAAATTGCACCGAACAAGAGGCTAAGTCAGCTTGCAGTAAGACAGGAATCATCAATTTTCAAGACAAGTATTTGCAAACATACAAGGCCAAACGAGTGCTTTCTTTGGTTCAGAGGCTGAATTATTCAAAGCTGGCCTTTGACGACTTCTGGGATAGAAATAGAAGCGGAATGTTGGAAGAAGATGAAATTCGTCGAGAGTTGATAAAGTCTAACGATACATGCTTAACAGGGCTTATTAGATCGTGTGACAATGATGGGAATCCAGGAATAAGCAAACAAGAGTGGTTCACCTGCTTCAAAACGGAAGGGGGTCAGTGGCGCTGGTCACCATGGACTGACTGTTCGGTCACGTGTGGAGGTGGTCGGCAAAGACGAACTGGCACCTGCGTTTTACCCAGCTCAGGACAAAAACTAGAAAGACGGCTGTGTGACGGACGTCATCATGAAACAAGAAACTGTTCCAACGGAGAGTGTCCCGACTGGATGAGTTCAGTTACCACTGATGGGAAATGGAGCCGCTGGTCACCGTGGACTGACTGCTCACTCTCTTGTGGAAAAGGTCGTCAGAGTAGAACACGCATCTGCAACGATACAGTCACTGGAAAATCCCTCAAGAATGGCTGGTGTGCTGGAAAACCACAACAAGAAAAAACATGCGCTGACTGGAAATGTCCAGATGGAAGAAAGGCAAGGTGTCCAGGATATAAGAAAGTTACTCTGAAGGGCCGAGTGTTGTCTTTGCGTGATATACCTCTTGCTGGAGCTAATATATCACTGGCCGAATCTCCTTATAAAATCCTGTCTCGGAGTCGAGAAAATGGCTTCTTTGAAGTTAACGCATTCTGCGTCGAAAAAGGAAACCCTCTTTTGATCACCAGGCATGGATACATCCCTCAACGTGTCAACATTACAAACGCAAAGTCTGTGTTAAAAGTTGAAATGGAGAATGCAGTTCACCCAACGGTGACATCCCACCCAGAGGACAGGAGACGCTTCGTTGGACAAGATGTAACATTTTGCTGCCAAGTGGAAGGAAATCCGCCACCAGTTATAGAATGGTTTAGGAATGGAAACATCTTGGATAAAGAAGAATTTAACAACAATGAAACGTTAGTGCTACGAAAAGTGGGGAAAAAAATGGCCGGAGACTTTAGATGTCGCGCAGTAAACGAATTTGGATCAGAATTTTCGGAATCAGCGGTATTAAAAGTTCTTGATCCAGTTATTGACACATGCAATCCTACGCCGTCCGACCATTTTGTTACACTTCCTGACGGATGCCTCGAAGATAACACTGGAAACAATAAGGTTAACATTGGAAAGTGCAATGACCATCCATGTTTGAGAGCTGGCACACAGTTCCCAGAGTTATGTGACGAGGCGGAGCGTTGTTGCCAGCCCGGAAAAGTGAATGATACAACCGTTCTTTGCGGTAAAGATGGTAAAGGGCAGTTTCAAATGGAAAAAGTGGTGAGCTGCAGGTGTGATGTTTGCAACGAAAGGAACACCATTGTAAAAGGAGTTGTAGTCGGTGGACCTGATGAAAGACCAGTGGAATATTGCGACATTCTGGTCAACGATACAGTTGTTACATATTCCGATTATGACGGGACGTTTGAAATACCTGTGCACAAGTCTGCAAAGCGACTGGTGGCGACATTTCGAGATTACATGGAAGAATTCGCAGAATCAACGGTGGTGCTTCCTTTCCGGAAAGGTACAACTACGTTTCACAAAATTCACCTTCGCCCGGAAGCAGAACCAATCGAATTCTACGCGGAAGAAAAGAAGACAGTGTCGATTTCAAAAGATGGAGCAGCAGAGGTAATCATACCAGCAAACAGTTTGCTTGACAAGAACGGAAATCCCCAAAAAGGCAAAGCTAAAGTAAAAGTACAGTTCAACGATCCCAGGAACGAGCGAGACATTCTGGAATCACCTGGCGATTTTACTACCGTAGACGAGGATGGTGAAGAACAATTGCTTAGAACATATGGCGTTTTCAAGATTAAACTACAAGACGAAAATAACCAAAACCTAGGCCTCACTAAGAGTCTTTATCTTAACATTGATCTTGAGAAACTGTCTGGAGAGGTATTCGACGAGTCTGCACCCATACCTCATTTGTGGTGGCTGGATGAAAAAACCGGCAGGTGGGTGGACGCAGGCGAACTTAAACGAAACGAAGAAATAACAGGACGCCCGAAGAGAAATTTACCCCCCGGACAGGTTTTTGCAATACTTGCACCCGAGAGCATTGGACAAATATACAACATCGATATAATTGAAGAACGCTGCTTTGCTAAGGTTAAGGCTTATGCACAAGGCGAAGGAATACAAAATGCAAAAGTCACTAGTATTTTCATAAATCCGGAGGGCCCGGTATTTCAAGGGTACTGTAACGAATTCACTGACTCAGATGGTAATGCATGCATCCCGACTCAGTGCAACAGCGTTGGGTATCTCGAAGTGGAGAAAGATGGATTGCCTTTGTTTCCTAAAGACAAAGAAGTGGCTCGCCTTCCTTCCCAAACACAAGCTTCCATTGTAGACAAGGTAAAATGTAACTTTTGTGAAAAAACTAAGATAAGAATCAAATTTAATACAGGCGCACCACAGACCAGCAATGGACCTGTTTACCAGAGAAGCCAATTAAATTCATGTCGGGATCAGAGCGCGGATCAGAGCTTCTCGTTTCATCTACACGACAAGCAAGAAGTCTTCAAGATAGAGTACAGACCACTAAGCAAGATAGAGCAAAGGTCGCGTAATTTGAGAAAATGCTTTGTGAAGATCTTGACTTCTGGAGGGGGGAAACGTACCCTAGTGAAGGCAGAGAGCTTTTCTAAAGATGGAAAAACAAAGCTCGGAGAAACGATTAAACAGACCGAACAAGTCAATAATGATAACTTATATGTAGCATGCTTAGAGTACAGTTGTCCCAAAGGAAAAAAGAAATTAATGCGGGTTACAGCTTTAACAGGAGAATTTAAAAAAAGTAAGGTGCAAAAATACTTGCTGGACCAGCAGGACGCGGAGGACCAGAAGGTGGCGGGAAAAAATGATGAGGAAAACGTGAGGAGCGTTGTAATGCCAAAACTTGGGACAATGACTGGCTCTAAATTTGGAATTTTCGAATGGTTGTTCCACGGTACAGAAAATTTAAAGGATTTAGAGGACAAGTGCCTTAAATCGGACAAAGCAGAGTTCGCAGTAAAATTTGAAATGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D3Z7H8	Cartilage intermediate layer protein 2 OS=Mus musculus OX=10090 GN=Cilp2 PE=1 SV=1
D3YXG0	Hemicentin-1 OS=Mus musculus OX=10090 GN=Hmcn1 PE=1 SV=1
Q96RW7	Hemicentin-1 OS=Homo sapiens OX=9606 GN=HMCN1 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001374 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00040 all species →	fn2	Fibronectin type II domain	Domain	Interproscan
PF00095 all species →	WAP	WAP-type (Whey Acidic Protein) 'four-disulfide core'	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan
PF10591 all species →	SPARC_Ca_bdg	Secreted protein acidic and rich in cysteine Ca binding region	Domain	Interproscan
PF00090 all species →	TSP_1	Thrombospondin type 1 domain	Domain	Interproscan
PF13927 all species →	Ig_3	Immunoglobulin domain	Domain	Interproscan
PF12661 all species →	hEGF	Human growth factor-like EGF	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR036645 all species →	Homologous_superfamily	Elafin-like superfamily	Interproscan
IPR000562 all species →	Domain	Fibronectin type II domain	Interproscan
IPR036383 all species →	Homologous_superfamily	Thrombospondin type-1 (TSP1) repeat superfamily	Interproscan
IPR000884 all species →	Repeat	Thrombospondin type-1 (TSP1) repeat	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR008197 all species →	Domain	WAP-type 'four-disulfide core' domain	Interproscan
IPR007110 all species →	Domain	Immunoglobulin-like domain	Interproscan
IPR011992 all species →	Homologous_superfamily	EF-hand domain pair	Interproscan
IPR036943 all species →	Homologous_superfamily	Fibronectin type II domain superfamily	Interproscan
IPR003598 all species →	Domain	Immunoglobulin subtype 2	Interproscan
IPR013806 all species →	Homologous_superfamily	Kringle-like fold	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR039675 all species →	Family	Cartilage intermediate layer protein 1/2	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR008969 all species →	Homologous_superfamily	Carboxypeptidase-like, regulatory domain superfamily	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR019577 all species →	Domain	SPARC/Testican, calcium-binding domain	Interproscan
IPR003599 all species →	Domain	Immunoglobulin subtype	Interproscan
IPR036179 all species →	Homologous_superfamily	Immunoglobulin-like domain superfamily	Interproscan
IPR013032 all species →	Conserved_site	EGF-like, conserved site	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR15031 all species →	CARTILAGE INTERMEDIATE LAYER PROTEIN CLIP	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan
GO:0005576 all species →	Cellular Component	extracellular region	Interproscan
GO:0030414 all species →	Molecular Function	peptidase inhibitor activity	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.2940.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.