Gene detail

Detailed information of evm.model.Ap2.2992 in Astrangia poculata

Genomic Location: Ap2:30317272...30330430
NR annotation: CAH3043325.1, unnamed protein product [Porites lobata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.2992

atggtagaaaaacaatctgaagatgaaagcaaaacagaatacgctttgtatgtcaaaaagtctgttgatgatgtgtcattaagttttctcgccacagttcgtcactcagtcagcaagaagccacaggatgccatgaatatctggatagaagagttaaaggaagattatttcagaatttgccttcgagaagtgaaaacatttgatggcaagcatcagaatatacaagtgcagacgaaaaccttcaagtcgctcaagctgccgcagctgttcaattcaaaccctcagaacgttgaaggacaagaggactggctggcttttacacggaaaggcgttcaactaacatttcagggaaaacaacaatttgaaaatggcggggcgcctccggaacaagacaactttgccttctgcaaggtacacaattttactgaagagttttatgcacctcctgttgtcatggtaacagcgaaccacctttacgatagcaagaacgtgtattctatcaaacccgaaaacaatgtccttaacgcttggatagaggaaataacgatttcatattttcgggtgtgcgtaaaagacttggcaggaatggagagtcagcatgatcctgttactgttgattatgcagttattggagattttgatccatgtatcaacatttcctgtaactacttcgctgtttgtaaagcgtttgggcccagggatgcgcggtgtatatgcgtggataactgtccgtcatacgaagagcccgtgtgttcctctaacggaaccacatacgacaacgagtgtgtgttccagcgagaaatgtgccacctgaaagctaacttcactctttaccatccgggtgactgtacaggatttccttcccagaaaggtcgccatcgtcttcatcgcaacccaagttgggccgaagcagtttgtgaacaagttccactggctccttacgtcttctatcctgataaaccggttcacatacaagtttctgtcaatcatgtcaacttctcagacccaagatatgtccacgaagccgtggtgccctgggttgaagaaatcagggagaacaactttacagtttgcgtaacacaggctgggagaaatgagaagaaaaatggacaagcgtttgccacagttgactttttagcataccagggggcccctgacgggggagtgtcgggtgaaatggacatgccgacttggtggactgggacgaactgccgcacggtatcactgcctccaagaaagtttaaatcagcgccaactgtacttgtgtcagccgagcatgaaaggcgtggtgtaaggcacgatgcctcctctgtgtgggtagaagacttaacaacaacgtctttcaagatctgcatcagagaattacagaactttgatggaattcaccaaagtatccatgttgactggatggcatttgaagagcttcatctacctctgtttagagagcacggatctatacactttgccaacgggaacaagccatccaaagactttaactatgcattttgtgaggatgttgtctttacgaagcattataacgactctccagcagtactggtgtctacaaaccattcaacaaacggaggaaacctgaaccccatttacaactccatatcagcttgggttgagtacataaacaagactggttttagagcatgcgtgaaagagttgtttgtgaaccagcatgatcctctgtcagtctcatatgcagtcatgccagatgtctgtgagccgggctggagtttctacaatggttcttgttactacaccagtaaaacatgtgagacatggtctaacgccagtacaatctgcagaggcatgggggcttatttacccgctattgaaagtcaggaagagaacgtgtatattcagcacagacacaatggtgacaaggcgtggattggtttgaatgacattgcaacagaaggattattctcctgggtggatggatgtcctgataaattccgctactgggcagagaaacaaccgaacgactttaggggagaggactgcgtacacacactcggtgctggtcatgggtacacgtggaatgacgtggattgctcggcatgtcaccggtatacctgcaaaaaagattatgacgaatgtaccagtactccgtgtttgaatggaggtacttgcaaaaatggtaaaaggacgtttagctgcatatgtccaccaactcacaaagggagttcatgtgaagagtttgacgaatgctccagcagtccatgtctgaatggtggaacttgtactgatggagttaataacttcacgtgtttttgtccttcgccatattttgggcgtcggtgtcaagaaacggatgaatgtcagtccaatccatgtcaaaatggtggaacatgtgtagatggtgtgtacaacttcacgtgcttgtgtccaagctattatgctggaccacgttgtgaagtatcaccagacatatcctgtaaaaaacactacacgtcgggattaaactctagtggaacctattacctgagtgtgtcgggacattctttccaggtatactgtgacatgtccgctaacggtggaggttggactctaatctcacgtttctcgaatgctgacagtgcaaactggatgcagtctagcggcagctggtggtatgaccgcacatctacttacggcagcgttaccagcccatcagataactacgacatgatatcacctgcattctggcttgtcacaggcaattatatcaaaataacccggagtgatgacagctctaacacagccttgttatacaccggcagctgcactggcgggagaaccttcaggagcttcatagcaagtttgggcaactttaggaatggcgctgtgtggaacagtcatggatgccgaggctcttgctactcgtactatgggggaagttattcatccactgcgggcttcagtcaggcgcactgcagcagcgatctccaaagtagtaattacttgtcattttggtgtgactggagcaatgatgacggagccgtgatgatgattggtggaggaggtactcgttgcaattacgcaaatcatgggattggtatcacggaagctaactggcctcgcttcggcacaggggactgcgatggagacttcggagatcattgcactcatcctaacagttattctctaaatctgtggataaagtag

Transcript

evm.model.Ap2.2992

ATGGTAGAAAAACAATCTGAAGATGAAAGCAAAACAGAATACGCTTTGTATGTCAAAAAGTCTGTTGATGATGTGTCATTAAGTTTTCTCGCCACAGTTCGTCACTCAGTCAGCAAGAAGCCACAGGATGCCATGAATATCTGGATAGAAGAGTTAAAGGAAGATTATTTCAGAATTTGCCTTCGAGAAGTGAAAACATTTGATGGCAAGCATCAGAATATACAAGTGCAGACGAAAACCTTCAAGTCGCTCAAGCTGCCGCAGCTGTTCAATTCAAACCCTCAGAACGTTGAAGGACAAGAGGACTGGCTGGCTTTTACACGGAAAGGCGTTCAACTAACATTTCAGGGAAAACAACAATTTGAAAATGGCGGGGCGCCTCCGGAACAAGACAACTTTGCCTTCTGCAAGGTACACAATTTTACTGAAGAGTTTTATGCACCTCCTGTTGTCATGGTAACAGCGAACCACCTTTACGATAGCAAGAACGTGTATTCTATCAAACCCGAAAACAATGTCCTTAACGCTTGGATAGAGGAAATAACGATTTCATATTTTCGGGTGTGCGTAAAAGACTTGGCAGGAATGGAGAGTCAGCATGATCCTGTTACTGTTGATTATGCAGTTATTGGAGATTTTGATCCATGTATCAACATTTCCTGTAACTACTTCGCTGTTTGTAAAGCGTTTGGGCCCAGGGATGCGCGGTGTATATGCGTGGATAACTGTCCGTCATACGAAGAGCCCGTGTGTTCCTCTAACGGAACCACATACGACAACGAGTGTGTGTTCCAGCGAGAAATGTGCCACCTGAAAGCTAACTTCACTCTTTACCATCCGGGTGACTGTACAGGATTTCCTTCCCAGAAAGGTCGCCATCGTCTTCATCGCAACCCAAGTTGGGCCGAAGCAGTTTGTGAACAAGTTCCACTGGCTCCTTACGTCTTCTATCCTGATAAACCGGTTCACATACAAGTTTCTGTCAATCATGTCAACTTCTCAGACCCAAGATATGTCCACGAAGCCGTGGTGCCCTGGGTTGAAGAAATCAGGGAGAACAACTTTACAGTTTGCGTAACACAGGCTGGGAGAAATGAGAAGAAAAATGGACAAGCGTTTGCCACAGTTGACTTTTTAGCATACCAGGGGGCCCCTGACGGGGGAGTGTCGGGTGAAATGGACATGCCGACTTGGTGGACTGGGACGAACTGCCGCACGGTATCACTGCCTCCAAGAAAGTTTAAATCAGCGCCAACTGTACTTGTGTCAGCCGAGCATGAAAGGCGTGGTGTAAGGCACGATGCCTCCTCTGTGTGGGTAGAAGACTTAACAACAACGTCTTTCAAGATCTGCATCAGAGAATTACAGAACTTTGATGGAATTCACCAAAGTATCCATGTTGACTGGATGGCATTTGAAGAGCTTCATCTACCTCTGTTTAGAGAGCACGGATCTATACACTTTGCCAACGGGAACAAGCCATCCAAAGACTTTAACTATGCATTTTGTGAGGATGTTGTCTTTACGAAGCATTATAACGACTCTCCAGCAGTACTGGTGTCTACAAACCATTCAACAAACGGAGGAAACCTGAACCCCATTTACAACTCCATATCAGCTTGGGTTGAGTACATAAACAAGACTGGTTTTAGAGCATGCGTGAAAGAGTTGTTTGTGAACCAGCATGATCCTCTGTCAGTCTCATATGCAGTCATGCCAGATGTCTGTGAGCCGGGCTGGAGTTTCTACAATGGTTCTTGTTACTACACCAGTAAAACATGTGAGACATGGTCTAACGCCAGTACAATCTGCAGAGGCATGGGGGCTTATTTACCCGCTATTGAAAGTCAGGAAGAGAACGTGTATATTCAGCACAGACACAATGGTGACAAGGCGTGGATTGGTTTGAATGACATTGCAACAGAAGGATTATTCTCCTGGGTGGATGGATGTCCTGATAAATTCCGCTACTGGGCAGAGAAACAACCGAACGACTTTAGGGGAGAGGACTGCGTACACACACTCGGTGCTGGTCATGGGTACACGTGGAATGACGTGGATTGCTCGGCATGTCACCGGTATACCTGCAAAAAAGATTATGACGAATGTACCAGTACTCCGTGTTTGAATGGAGGTACTTGCAAAAATGGTAAAAGGACGTTTAGCTGCATATGTCCACCAACTCACAAAGGGAGTTCATGTGAAGAGTTTGACGAATGCTCCAGCAGTCCATGTCTGAATGGTGGAACTTGTACTGATGGAGTTAATAACTTCACGTGTTTTTGTCCTTCGCCATATTTTGGGCGTCGGTGTCAAGAAACGGATGAATGTCAGTCCAATCCATGTCAAAATGGTGGAACATGTGTAGATGGTGTGTACAACTTCACGTGCTTGTGTCCAAGCTATTATGCTGGACCACGTTGTGAAGTATCACCAGACATATCCTGTAAAAAACACTACACGTCGGGATTAAACTCTAGTGGAACCTATTACCTGAGTGTGTCGGGACATTCTTTCCAGGTATACTGTGACATGTCCGCTAACGGTGGAGGTTGGACTCTAATCTCACGTTTCTCGAATGCTGACAGTGCAAACTGGATGCAGTCTAGCGGCAGCTGGTGGTATGACCGCACATCTACTTACGGCAGCGTTACCAGCCCATCAGATAACTACGACATGATATCACCTGCATTCTGGCTTGTCACAGGCAATTATATCAAAATAACCCGGAGTGATGACAGCTCTAACACAGCCTTGTTATACACCGGCAGCTGCACTGGCGGGAGAACCTTCAGGAGCTTCATAGCAAGTTTGGGCAACTTTAGGAATGGCGCTGTGTGGAACAGTCATGGATGCCGAGGCTCTTGCTACTCGTACTATGGGGGAAGTTATTCATCCACTGCGGGCTTCAGTCAGGCGCACTGCAGCAGCGATCTCCAAAGTAGTAATTACTTGTCATTTTGGTGTGACTGGAGCAATGATGACGGAGCCGTGATGATGATTGGTGGAGGAGGTACTCGTTGCAATTACGCAAATCATGGGATTGGTATCACGGAAGCTAACTGGCCTCGCTTCGGCACAGGGGACTGCGATGGAGACTTCGGAGATCATTGCACTCATCCTAACAGTTATTCTCTAAATCTGTGGATAAAGTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q91ZW8	CD209 antigen-like protein D OS=Mus musculus OX=10090 GN=Cd209d PE=2 SV=1
Q28670	Aggrecan core protein OS=Oryctolagus cuniculus OX=9986 GN=ACAN PE=2 SV=2
Q28343	Aggrecan core protein OS=Canis lupus familiaris OX=9615 GN=ACAN PE=2 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000073 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF07648 all species →	Kazal_2	Kazal-type serine protease inhibitor domain	Domain	Interproscan
PF00147 all species →	Fibrinogen_C	Fibrinogen beta and gamma chains, C-terminal globular domain	Domain	Interproscan
PF00059 all species →	Lectin_C	Lectin C-type domain	Domain	Interproscan
PF00008 all species →	EGF	EGF-like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002181 all species →	Domain	Fibrinogen, alpha/beta/gamma chain, C-terminal globular domain	Interproscan
IPR002350 all species →	Domain	Kazal domain	Interproscan
IPR018097 all species →	Conserved_site	EGF-like calcium-binding, conserved site	Interproscan
IPR001304 all species →	Domain	C-type lectin-like	Interproscan
IPR016187 all species →	Homologous_superfamily	C-type lectin fold	Interproscan
IPR018378 all species →	Conserved_site	C-type lectin, conserved site	Interproscan
IPR051830 all species →	Family	Neurogenic locus notch homolog	Interproscan
IPR036058 all species →	Homologous_superfamily	Kazal domain superfamily	Interproscan
IPR000742 all species →	Domain	EGF-like domain	Interproscan
IPR001881 all species →	Domain	EGF-like calcium-binding domain	Interproscan
IPR000152 all species →	PTM	EGF-type aspartate/asparagine hydroxylation site	Interproscan
IPR014716 all species →	Homologous_superfamily	Fibrinogen, alpha/beta/gamma chain, C-terminal globular, subdomain 1	Interproscan
IPR036056 all species →	Homologous_superfamily	Fibrinogen-like, C-terminal	Interproscan
IPR037221 all species →	Homologous_superfamily	H-type lectin domain superfamily	Interproscan
IPR016186 all species →	Homologous_superfamily	C-type lectin-like/link domain superfamily	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24033 all species →	EGF-LIKE DOMAIN-CONTAINING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005509 all species →	Molecular Function	calcium ion binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.2992.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.