Gene detail

Detailed information of evm.model.Ap2.3010 in Astrangia poculata

Genomic Location: Ap2:30535475...30571417
NR annotation: XP_020601961.1, protein phosphatase 1 regulatory subunit 12A-like isoform X2 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.3010

atggcggacccttttacgggtggccaaagctctagagcaagtaatgctttacagaagcgacaagaatccttaaaacgatggacgaagagcgagacagcactagaatcttcggataggtcgagaaagaagactaaaattcaattttcgcttggaactgtgtttctttcagcggtatcgagcggtgacgtggaggaggtgaagaaacttctggccaaaggcgctgatataaatcaccaaaatgtcgatggacttactgcgttacatcaggcttgcatcgacgaaagttatgatctcgtcaattttttggttgatcatggagcccgaatggacatacgagacaacgagggctggacgccacttcacgctgcagccagttgcgggagcgttgaaatagcacaatgtttaattgaccatggagcagatgtagcagctgttaataatgagggggaattgcctcttgatcttgctgaggaagaagacatggaggatcttttaacggatgaaattgaaagattaggaattgatgtagaatcagcaagaagtatagaagagagaataatgttagaagatgcccagagttggacgaatggtagaacaataaatgaaagtaaagatagatcaggtgcaactgcattacatgttgctgcatcaaaaggttatttacaagttattagtcttttacttcaacttggtgttgatatcaatgctaaagacaatgatggttggacgccattacatgcagctgttcactgggggcagaatgatgcctgtgaagtattagcagatcatggagctaactttagtgccaggaatagaatgggctctacacctattgacctagcagaaccagacatggttaaaatgcttgaagagctcaagaaaaggcaaaatgataaaccaaagatcaatgcatcaacaacaccagtcataaaaagtaatatggaatctgggcctgccccactgaaacgacggagctccataaccagaataaaggaccaaaacctttttctcagggacatcaatcaggagagggctcaaatggaggccagcagagagcagatgacgtcccccaagagcaagacctccaggccgccgagtttctctgactcgcccaaggaggataaagaaaacgagaaggagaaacgagacggattcagtaaagaagacagcggatccgagtcggataccgaggatagcaccgaggagtctagtgaagaagattccgaggaagaagaaccacctaagccatcggtgaactcggttcctcccagggcaagacctacggtcaattctctaccttctaaacctgcggttaattcagtaaaaaagccagcagaggaatcagagtcggaagaagaaaccggcagtgaaactgaagaatcctccgaagaggaggaagaggaagagccggtcaaacctgatacgcgaacgagtacaaccagttctacgtcacggacgcccgtgtcgcgtctacagagtgcgcctgcaggtgcaccaaaacctggggtaggaggaggcacgtcgaagcttctcaaatccccttttctagacaatgataagaaggcaaatgtaccttcttcacctgtttcaaaaactgaaccctctaggacttctagattcggtgctaaggaagataccagagatgatactaagtcacggtttgggagctacccaacacgtactacggctgatactacgagtaatgcatccagcaccactagtacaaggagaggagttagttccactccgatcgaggacactcaaacaaaaacaagacgacccaagagggtcactcagagggccgctacatcctacgtgggaaatggcggcaagggagatgaagaggaagaggagaacgaggaggaggatagaaaaagtaatgatatcactcacagaaaaggagtcgaggaacgcaaggacacttctgtgcggcgaggctctagagaagaagcaaagtcgacgaggccttcttccaccaccgatacgttcctgagccggcggaacaggttaagcggcacagctgaggacaagaacgagccggacggtcgacagaacacccggcagcagcagcaggcggggagaaacaaggagaacgaggaagccgagctaccggcctggaagagaaggctacaggaacgagaaaaagaacgagagaaggagaaggagcaagagagggagagggaaaaacaaagggaaagagaacgggaaaaagagaaggagagtgagatgccgagctatcgtcgctccaggcttgagagggagaaggagaaagaaaaagagaaggaggagaaagagaaagaagatgatgactcgtctgcgtcggctgcagcacgtgcaaggagggccaggagactgagggagaaacgtcgaggagggagcgatgaggaagaaagtgaggaagtcaaagatcccaaaaagaacaccaaactaaacgaagaaaatgacgagaaagcacctgtaggcagcagaagacgatcccaggaaactagacaagacgatgtcaagagtacgacggacagaataggacgaggcagaactagtgattctaaaggaccctttggtacttccaaggcaaacactgctataacagaaacggatccccaaaagttgaaagaaaggctccaagaggcgcagctagaactacaagaatacaaagtcaaactagaaaaggccttgcaggcaaaggaagagcttgaaagaaaatacgctaacgctgatgatgatctaaagcaactagcggacctgaaagcggacaaccagcggctgaaagacgagaacggtgctttaatccgtgttataagcaagttatcacgaccgcctacttga

Transcript

evm.model.Ap2.3010

AAGATGGCGGACCCTTTTACGGGTGGCCAAAGCTCTAGAGCAAGTAATGCTTTACAGAAGCGACAAGAATCCTTAAAACGATGGACGAAGAGCGAGACAGCACTAGAATCTTCGGATAGGTCGAGAAAGAAGACTAAAATTCAATTTTCGCTTGGAACTGTGTTTCTTTCAGCGGTATCGAGCGGTGACGTGGAGGAGGTGAAGAAACTTCTGGCCAAAGGCGCTGATATAAATCACCAAAATGTCGATGGACTTACTGCGTTACATCAGGCTTGCATCGACGAAAGTTATGATCTCGTCAATTTTTTGGTTGATCATGGAGCCCGAATGGACATACGAGACAACGAGGGCTGGACGCCACTTCACGCTGCAGCCAGTTGCGGGAGCGTTGAAATAGCACAATGTTTAATTGACCATGGAGCAGATGTAGCAGCTGTTAATAATGAGGGGGAATTGCCTCTTGATCTTGCTGAGGAAGAAGACATGGAGGATCTTTTAACGGATGAAATTGAAAGATTAGGAATTGATGTAGAATCAGCAAGAAGTATAGAAGAGAGAATAATGTTAGAAGATGCCCAGAGTTGGACGAATGGTAGAACAATAAATGAAAGTAAAGATAGATCAGGTGCAACTGCATTACATGTTGCTGCATCAAAAGGTTATTTACAAGTTATTAGTCTTTTACTTCAACTTGGTGTTGATATCAATGCTAAAGACAATGATGGTTGGACGCCATTACATGCAGCTGTTCACTGGGGGCAGAATGATGCCTGTGAAGTATTAGCAGATCATGGAGCTAACTTTAGTGCCAGGAATAGAATGGGCTCTACACCTATTGACCTAGCAGAACCAGACATGGTTAAAATGCTTGAAGAGCTCAAGAAAAGGCAAAATGATAAACCAAAGATCAATGCATCAACAACACCAGTCATAAAAAGTAATATGGAATCTGGGCCTGCCCCACTGAAACGACGGAGCTCCATAACCAGAATAAAGGACCAAAACCTTTTTCTCAGGGACATCAATCAGGAGAGGGCTCAAATGGAGGCCAGCAGAGAGCAGATGACGTCCCCCAAGAGCAAGACCTCCAGGCCGCCGAGTTTCTCTGACTCGCCCAAGGAGGATAAAGAAAACGAGAAGGAGAAACGAGACGGATTCAGTAAAGAAGACAGCGGATCCGAGTCGGATACCGAGGATAGCACCGAGGAGTCTAGTGAAGAAGATTCCGAGGAAGAAGAACCACCTAAGCCATCGGTGAACTCGGTTCCTCCCAGGGCAAGACCTACGGTCAATTCTCTACCTTCTAAACCTGCGGTTAATTCAGTAAAAAAGCCAGCAGAGGAATCAGAGTCGGAAGAAGAAACCGGCAGTGAAACTGAAGAATCCTCCGAAGAGGAGGAAGAGGAAGAGCCGGTCAAACCTGATACGCGAACGAGTACAACCAGTTCTACGTCACGGACGCCCGTGTCGCGTCTACAGAGTGCGCCTGCAGGTGCACCAAAACCTGGGGTAGGAGGAGGCACGTCGAAGCTTCTCAAATCCCCTTTTCTAGACAATGATAAGAAGGCAAATGTACCTTCTTCACCTGTTTCAAAAACTGAACCCTCTAGGACTTCTAGATTCGGTGCTAAGGAAGATACCAGAGATGATACTAAGTCACGGTTTGGGAGCTACCCAACACGTACTACGGCTGATACTACGAGTAATGCATCCAGCACCACTAGTACAAGGAGAGGAGTTAGTTCCACTCCGATCGAGGACACTCAAACAAAAACAAGACGACCCAAGAGGGTCACTCAGAGGGCCGCTACATCCTACGTGGGAAATGGCGGCAAGGGAGATGAAGAGGAAGAGGAGAACGAGGAGGAGGATAGAAAAAGTAATGATATCACTCACAGAAAAGGAGTCGAGGAACGCAAGGACACTTCTGTGCGGCGAGGCTCTAGAGAAGAAGCAAAGTCGACGAGGCCTTCTTCCACCACCGATACGTTCCTGAGCCGGCGGAACAGGTTAAGCGGCACAGCTGAGGACAAGAACGAGCCGGACGGTCGACAGAACACCCGGCAGCAGCAGCAGGCGGGGAGAAACAAGGAGAACGAGGAAGCCGAGCTACCGGCCTGGAAGAGAAGGCTACAGGAACGAGAAAAAGAACGAGAGAAGGAGAAGGAGCAAGAGAGGGAGAGGGAAAAACAAAGGGAAAGAGAACGGGAAAAAGAGAAGGAGAGTGAGATGCCGAGCTATCGTCGCTCCAGGCTTGAGAGGGAGAAGGAGAAAGAAAAAGAGAAGGAGGAGAAAGAGAAAGAAGATGATGACTCGTCTGCGTCGGCTGCAGCACGTGCAAGGAGGGCCAGGAGACTGAGGGAGAAACGTCGAGGAGGGAGCGATGAGGAAGAAAGTGAGGAAGTCAAAGATCCCAAAAAGAACACCAAACTAAACGAAGAAAATGACGAGAAAGCACCTGTAGGCAGCAGAAGACGATCCCAGGAAACTAGACAAGACGATGTCAAGAGTACGACGGACAGAATAGGACGAGGCAGAACTAGTGATTCTAAAGGACCCTTTGGTACTTCCAAGGCAAACACTGCTATAACAGAAACGGATCCCCAAAAGTTGAAAGAAAGGCTCCAAGAGGCGCAGCTAGAACTACAAGAATACAAAGTCAAACTAGAAAAGGCCTTGCAGGCAAAGGAAGAGCTTGAAAGAAAATACGCTAACGCTGATGATGATCTAAAGCAACTAGCGGACCTGAAAGCGGACAACCAGCGGCTGAAAGACGAGAACGGTGCTTTAATCCGTGTTATAAGCAAGTTATCACGACCGCCTACTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6DRG7	Protein phosphatase 1 regulatory subunit 12A OS=Danio rerio OX=7955 GN=ppp1r12a PE=2 SV=2
O14974	Protein phosphatase 1 regulatory subunit 12A OS=Homo sapiens OX=9606 GN=PPP1R12A PE=1 SV=1
Q90623	Protein phosphatase 1 regulatory subunit 12A OS=Gallus gallus OX=9031 GN=PPP1R12A PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002411 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF15898 all species →	PRKG1_interact	cGMP-dependent protein kinase interacting domain	Coiled-coil	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR031775 all species →	Domain	cGMP-dependent protein kinase, interacting domain	Interproscan
IPR051226 all species →	Family	Protein Phosphatase 1 Regulatory Subunit	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24179 all species →	PROTEIN PHOSPHATASE 1 REGULATORY SUBUNIT 12	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0019901 all species →	Molecular Function	protein kinase binding	Interproscan
GO:0004857 all species →	Molecular Function	enzyme inhibitor activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0019208 all species →	Molecular Function	phosphatase regulator activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K06270	PPP1R12A, MYPT1; protein phosphatase 1 regulatory subunit 12A	-	Protein phosphatases and associated proteins	ko01009	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.