Gene detail

Detailed information of evm.model.Ap2.3028 in Astrangia poculata

Genomic Location: Ap2:30815225...30819372
NR annotation: XP_020610758.1, toll-interacting protein B-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

Transcript

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q6INE3	Toll-interacting protein B OS=Xenopus laevis OX=8355 GN=tollip-b PE=2 SV=1
Q6DFR0	Toll-interacting protein OS=Xenopus tropicalis OX=8364 GN=tollip PE=2 SV=1
Q2LGB5	Toll-interacting protein OS=Bos taurus OX=9913 GN=TOLLIP PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0006832 (this species only)
Ubiquitin family	UBD\|Alpha-Helix\|CUE · all ubiquitin genes in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00168 all species →	C2	C2 domain	Domain	Interproscan
PF02845 all species →	CUE	CUE domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000008 all species →	Domain	C2 domain	Interproscan
IPR003892 all species →	Domain	Ubiquitin system component CUE	Interproscan
IPR035892 all species →	Homologous_superfamily	C2 domain superfamily	Interproscan
IPR009060 all species →	Homologous_superfamily	UBA-like superfamily	Interproscan
IPR037301 all species →	Domain	Toll-interacting protein, C2 domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR16461 all species →	TOLL-INTERACTING PROTEIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0043130 all species →	Molecular Function	ubiquitin binding	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0006511 all species →	Biological Process	ubiquitin-dependent protein catabolic process	Interproscan
GO:0031624 all species →	Molecular Function	ubiquitin conjugating enzyme binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05402	TOLLIP; toll-interacting protein	-	Exosome	ko04147	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.