Genomic Location: Ap2:31339336...31358335
NR annotation: XP_027056127.1, uncharacterized protein LOC113683117 [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap2.3081 |
| Transcript |
| evm.model.Ap2.3081 |
| Protein |
| evm.model.Ap2.3081 |
| UniProt accession | Description |
|---|---|
| C8YR32 | Lipoxygenase homology domain-containing protein 1 OS=Mus musculus OX=10090 GN=Loxhd1 PE=2 SV=1 |
| Q8IVV2 | Lipoxygenase homology domain-containing protein 1 OS=Homo sapiens OX=9606 GN=LOXHD1 PE=2 SV=4 |
| P26258 | Tetranectin-like protein OS=Carcharhinus perezii OX=303935 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0007821 (this species only) · gene tree & orthology |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00008 all species → | EGF | EGF-like domain | Domain | Interproscan |
| PF00059 all species → | Lectin_C | Lectin C-type domain | Domain | Interproscan |
| PF00188 all species → | CAP | Cysteine-rich secretory protein family | Domain | Interproscan |
| PF01477 all species → | PLAT | PLAT/LH2 domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR001024 all species → | Domain | PLAT/LH2 domain | Interproscan |
| IPR016186 all species → | Homologous_superfamily | C-type lectin-like/link domain superfamily | Interproscan |
| IPR052970 all species → | Family | Inner ear hair cell lipoxygenase homology domain-containing protein | Interproscan |
| IPR001304 all species → | Domain | C-type lectin-like | Interproscan |
| IPR000742 all species → | Domain | EGF-like domain | Interproscan |
| IPR035940 all species → | Homologous_superfamily | CAP superfamily | Interproscan |
| IPR036392 all species → | Homologous_superfamily | PLAT/LH2 domain superfamily | Interproscan |
| IPR013320 all species → | Homologous_superfamily | Concanavalin A-like lectin/glucanase domain superfamily | Interproscan |
| IPR016187 all species → | Homologous_superfamily | C-type lectin fold | Interproscan |
| IPR014044 all species → | Domain | CAP domain | Interproscan |
| IPR018378 all species → | Conserved_site | C-type lectin, conserved site | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR45901 all species → | PROTEIN CBG12474 | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0005515 all species → | Molecular Function | protein binding | Interproscan |
evm.model.Ap2.3081.Transcript abundance of evm.model.Ap2.3081 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
