Genomic Location: Ap2:31397120...31404329
NR annotation: XP_020614779.1, proline-rich extensin-like protein EPR1 [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families
| CDS |
| evm.model.Ap2.3086 |
| Transcript |
| evm.model.Ap2.3086 |
| Protein |
| evm.model.Ap2.3086 |
| UniProt accession | Description |
|---|---|
| Q9IAM1 | Snaclec agkisacutacin subunit A OS=Deinagkistrodon acutus OX=36307 PE=1 SV=2 |
| Q71RR4 | Snaclec coagulation factor IX/factor X-binding protein subunit A OS=Trimeresurus stejnegeri OX=39682 PE=2 SV=1 |
| Q62028 | Secretory phospholipase A2 receptor OS=Mus musculus OX=10090 GN=Pla2r1 PE=1 SV=1 |
| Family type | Membership / link |
|---|---|
| Orthogroup (gene family) | OG0009311 (this species only) |
| Pfam accession | Pfam name | Description | Type | Source |
|---|---|---|---|---|
| PF00059 all species → | Lectin_C | Lectin C-type domain | Domain | Interproscan |
| InterPro term | Type | Description | Source |
|---|---|---|---|
| IPR051004 all species → | Family | Dendritic cell-specific ICAM-grabbing non-integrin domain-containing protein | Interproscan |
| IPR001304 all species → | Domain | C-type lectin-like | Interproscan |
| IPR016186 all species → | Homologous_superfamily | C-type lectin-like/link domain superfamily | Interproscan |
| IPR035940 all species → | Homologous_superfamily | CAP superfamily | Interproscan |
| IPR036364 all species → | Homologous_superfamily | SEA domain superfamily | Interproscan |
| IPR016187 all species → | Homologous_superfamily | C-type lectin fold | Interproscan |
| PANTHER term | Description | Source |
|---|---|---|
| PTHR22802 all species → | C-TYPE LECTIN SUPERFAMILY MEMBER | Interproscan |
| GO term | Category | Description | Source |
|---|---|---|---|
| GO:0009897 all species → | Cellular Component | external side of plasma membrane | Interproscan |
| GO:0030246 all species → | Molecular Function | carbohydrate binding | Interproscan |
| GO:0044419 all species → | Biological Process | biological process involved in interspecies interaction between organisms | Interproscan |
evm.model.Ap2.3086.Transcript abundance of evm.model.Ap2.3086 across 49 RNA-seq samples of Astrangia poculata. This gene has no row in the species' RNA-seq expression matrix, so every value below is shown as zero — the matrix simply does not cover this transcript. Values are TPM (transcripts per million) from the StringTie quantification; one bar is one sample, grouped and coloured by condition, sorted by expression within each group.
| Condition | Samples | TPM > 0 | Mean TPM | Max TPM | Mean, relative to max |
|---|---|---|---|---|---|
| whole organism · cold control | 14 | 0 | 0.00 | 0.00 | |
| whole organism · heat control | 12 | 0 | 0.00 | 0.00 | |
| whole organism · cold challenge | 12 | 0 | 0.00 | 0.00 | |
| whole organism · heat challenge | 11 | 0 | 0.00 | 0.00 |
Source: CnidoSite RNA-seq expression matrices (APOCU_TPM,
StringTie quantification over 49 runs), joined to SRA sample
metadata. Samples whose tissue/treatment is not recorded in the source metadata are grouped
by the descriptor carried in the expression matrix itself.
