Detailed information of evm.model.Ap2.3101 in Astrangia poculata

Genomic Location: Ap2:31554151...31564819
NR annotation: XP_027056071.1, LOW QUALITY PROTEIN: synaptonemal complex protein 1-like, partial [Pocillopora damicornis]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
UniProt accessionDescription
Q62209Synaptonemal complex protein 1 OS=Mus musculus OX=10090 GN=Sycp1 PE=1 SV=2
Q03410Synaptonemal complex protein 1 OS=Rattus norvegicus OX=10116 GN=Sycp1 PE=1 SV=2
Q15431Synaptonemal complex protein 1 OS=Homo sapiens OX=9606 GN=SYCP1 PE=1 SV=2
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0005881 (this species only)

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF05483
all species →		SCP-1Synaptonemal complex protein 1 (SCP-1)Coiled-coilInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR008827
all species →		FamilySynaptonemal complex protein 1Interproscan

 PANTHER
PANTHER termDescriptionSource
PTHR46918
all species →		SYNAPTONEMAL COMPLEX PROTEIN 1Interproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0000795
all species →		Cellular Componentsynaptonemal complexInterproscan
GO:0007130
all species →		Biological Processsynaptonemal complex assemblyInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap2.3101.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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