Gene detail

Detailed information of evm.model.Ap2.323 in Astrangia poculata

Genomic Location: Ap2:2978549...3017100
NR annotation: XP_020614297.1, organic cation transporter protein-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.323

atgtatgccttgtcaaagctgaacaagcaaaacgaacaaacgtgggttaaccttcagaaacgcctgaatgaagtccagttttcatacaagaaattatttcctgagccggttcacaatttcatcaacaacaaggcagtgtctgttggtagctgcgaaggatattttgtcccttccctcctcacaaccacagcctatctactagcctgtaatcacgcgcgagtacagacactaacccatgatcaaccactgaacatttacaccatattcgtgggctaccctggaacagggaaatcatcggccatacagcacgcatcacaggatcatttggaaaacctagacctaacctcctccgtcatcagtaaaaccacttcgtcaggtttggtgaaactactggctacccaaaagagaggaatcatcctctctccagagttatgcgacatcttaaataagttgttgaagtccgacgaagataatgccacgggtgacattcaactgctctgcaaactgttttcgggcgaacgatgttcttatcactattcaacggaagagagcagagtaataccacagaatacacccttcagcatcttaggctctacgcagcttcaaaacgccgcgaaacttattgcaaaaatggaccacggccatggtttaattgacaggatgctaattgccacccccttggcttacaggccaaccctttcagaaatggagagggcaacggaacaactctcaacagaagttggtgaggactttgccgaatactttcaaaacctcagtgagacagccgacaacatccaattcaccctcgccgcagatgccaaattcatgtatcgagaaaccattgatcagttcgcagtggaagagcagctcaacaccctggcccgtgctcagacctggtacatcgacgggacgttcaaacttgttcgccaccccttcaaacagcttctaacagtgaatgcgttcgtcagatctggggagtatgccaagcaggtgccacttgcttacgtacttatgtccagcaagaaggcattggattataaaaaggtgctccaaaagctaatgcagttaatgcccgagcccgccgttaagcgagtcactgtggacttcgaaaaggcgctgtggtcggcacttcgagcagtccttcccaccgttaaaatacaaggatgcgtcttccactggacacaagccgtctggaggaaggtacaagagcttggtcttcagacggcttattctggtagcgattcgatttatcagtacatccgtaagatcatggccctcccattccttccgcgccgagaaatccggccaatgttcatccgcctagaagtccaagcccaaacagagccgctaaagaaactggtcagctacctcagaaaacaatggatcgagagcaagtgttgtcgctttgcaaaaaaagtgcctgcaaaaatcattaccatcgtcaagaatgcaagactacaaagatttagccatttagccattaaactaacagccctgaccaaggaagaagagttgttcaaagcgccaccaggtgtgatggctgaaagtgcgaaatcagaagacaaaaagcggacctatgagtttgatgacatatttgaccatgtgtcatctttcggaagataccagaaaattttgtacttctgtacttgtttgacggcttttcctatagcgaatcagttttccttgctagtatttggttttggtacccctggctttcactgtgtcacgccaaatgtcacgtgtgacgcaaagaaatgttgtgacggatgtacgtcatacgagtttgacggaccttttcacagcaccgtgtcagagtggaaccttatctgtgaccgcgcgttcctgggggctactattcagtcctgttttttcgctggaatgttagttggttcaattgtgaccgggatgatgtcagacgcctggggcagaaagaaatgcatcttcatttgcaatgctattatgcttgtaaccggattcgggtcaacatttgttcattccatccctctgttcgcggttctccggtttatggttggctttggtcttacaggcgtcatgttgtcacattatattttttgtatggagttggttggacccagcacaagaacagccgcgggcaatatggcttatttttactacaatggcttccaaatgttgtttgtccttatcgcttattttgaacgagattggaggaatctaatcatgattgttactctgccagccatattgctgttccctttttggaaatgtattccagaatcccctcgatggctcatcgctcacgatcgcctggacgaggctcaaaccattatcgagcgtttcggaggcaagaagaataaacctgtagactcaggggtgataagagctctgttggaaaatgtgaggaaagaacagctaaaaggagaccaagaagctaagaaatacacaccgatcgacttgtttcgcacaccaaagctgagaaaatggacggcgattatctgctatcagtggtttgtcgtggcgctggtctttttcgggatgtttatattcgtctctcaactggttggcgatatttacgtcaattataccatcatgatggttgttacaactctcaggatacctatcacctggatcctttaccttaaatttggtcgccgaatttgccatgcaattatcatgatcgtggtagggattaccttctcactggttttgctggtgtaccaagattctccctcggcaacaacagcgttgtctctttttggataccttatgattgactgcacttggacgagtgtttatctgatgacgtctgagctctttccaaccgttttgaggaacacagctcaaggaacaggatctatgagcgctcgggttggtggaatcttagctccatacgtcgctttgatgggtcagttaccaggtctcagcattgcctttccagcaatcatttttggtgtcgtcgcagttcttgctgggatattgatgtactggattccagagacgctcttctcacccatgcaccaaaccatcgaagaaacagaagcagctgaagatgattatgggataccttgctgtggcaaaaggtttaatctacaacgaaagcaagaggctgaagaaaacaatgcggtacagcgaaagaagaatggcggacagtaa

Transcript

evm.model.Ap2.323

ATGTATGCCTTGTCAAAGCTGAACAAGCAAAACGAACAAACGTGGGTTAACCTTCAGAAACGCCTGAATGAAGTCCAGTTTTCATACAAGAAATTATTTCCTGAGCCGGTTCACAATTTCATCAACAACAAGGCAGTGTCTGTTGGTAGCTGCGAAGGATATTTTGTCCCTTCCCTCCTCACAACCACAGCCTATCTACTAGCCTGTAATCACGCGCGAGTACAGACACTAACCCATGATCAACCACTGAACATTTACACCATATTCGTGGGCTACCCTGGAACAGGGAAATCATCGGCCATACAGCACGCATCACAGGATCATTTGGAAAACCTAGACCTAACCTCCTCCGTCATCAGTAAAACCACTTCGTCAGGTTTGGTGAAACTACTGGCTACCCAAAAGAGAGGAATCATCCTCTCTCCAGAGTTATGCGACATCTTAAATAAGTTGTTGAAGTCCGACGAAGATAATGCCACGGGTGACATTCAACTGCTCTGCAAACTGTTTTCGGGCGAACGATGTTCTTATCACTATTCAACGGAAGAGAGCAGAGTAATACCACAGAATACACCCTTCAGCATCTTAGGCTCTACGCAGCTTCAAAACGCCGCGAAACTTATTGCAAAAATGGACCACGGCCATGGTTTAATTGACAGGATGCTAATTGCCACCCCCTTGGCTTACAGGCCAACCCTTTCAGAAATGGAGAGGGCAACGGAACAACTCTCAACAGAAGTTGGTGAGGACTTTGCCGAATACTTTCAAAACCTCAGTGAGACAGCCGACAACATCCAATTCACCCTCGCCGCAGATGCCAAATTCATGTATCGAGAAACCATTGATCAGTTCGCAGTGGAAGAGCAGCTCAACACCCTGGCCCGTGCTCAGACCTGGTACATCGACGGGACGTTCAAACTTGTTCGCCACCCCTTCAAACAGCTTCTAACAGTGAATGCGTTCGTCAGATCTGGGGAGTATGCCAAGCAGGTGCCACTTGCTTACGTACTTATGTCCAGCAAGAAGGCATTGGATTATAAAAAGGTGCTCCAAAAGCTAATGCAGTTAATGCCCGAGCCCGCCGTTAAGCGAGTCACTGTGGACTTCGAAAAGGCGCTGTGGTCGGCACTTCGAGCAGTCCTTCCCACCGTTAAAATACAAGGATGCGTCTTCCACTGGACACAAGCCGTCTGGAGGAAGGTACAAGAGCTTGGTCTTCAGACGGCTTATTCTGGTAGCGATTCGATTTATCAGTACATCCGTAAGATCATGGCCCTCCCATTCCTTCCGCGCCGAGAAATCCGGCCAATGTTCATCCGCCTAGAAGTCCAAGCCCAAACAGAGCCGCTAAAGAAACTGGTCAGCTACCTCAGAAAACAATGGATCGAGAGCAAGTGTTGTCGCTTTGCAAAAAAAGTGCCTGCAAAAATCATTACCATCGTCAAGAATGCAAGACTACAAAGATTTAGCCATTTAGCCATTAAACTAACAGCCCTGACCAAGGAAGAAGAGTTGTTCAAAGCGCCACCAGGTGTGATGGCTGAAAGTGCGAAATCAGAAGACAAAAAGCGGACCTATGAGTTTGATGACATATTTGACCATGTGTCATCTTTCGGAAGATACCAGAAAATTTTGTACTTCTGTACTTGTTTGACGGCTTTTCCTATAGCGAATCAGTTTTCCTTGCTAGTATTTGGTTTTGGTACCCCTGGCTTTCACTGTGTCACGCCAAATGTCACGTGTGACGCAAAGAAATGTTGTGACGGATGTACGTCATACGAGTTTGACGGACCTTTTCACAGCACCGTGTCAGAGTGGAACCTTATCTGTGACCGCGCGTTCCTGGGGGCTACTATTCAGTCCTGTTTTTTCGCTGGAATGTTAGTTGGTTCAATTGTGACCGGGATGATGTCAGACGCCTGGGGCAGAAAGAAATGCATCTTCATTTGCAATGCTATTATGCTTGTAACCGGATTCGGGTCAACATTTGTTCATTCCATCCCTCTGTTCGCGGTTCTCCGGTTTATGGTTGGCTTTGGTCTTACAGGCGTCATGTTGTCACATTATATTTTTTGTATGGAGTTGGTTGGACCCAGCACAAGAACAGCCGCGGGCAATATGGCTTATTTTTACTACAATGGCTTCCAAATGTTGTTTGTCCTTATCGCTTATTTTGAACGAGATTGGAGGAATCTAATCATGATTGTTACTCTGCCAGCCATATTGCTGTTCCCTTTTTGGAAATGTATTCCAGAATCCCCTCGATGGCTCATCGCTCACGATCGCCTGGACGAGGCTCAAACCATTATCGAGCGTTTCGGAGGCAAGAAGAATAAACCTGTAGACTCAGGGGTGATAAGAGCTCTGTTGGAAAATGTGAGGAAAGAACAGCTAAAAGGAGACCAAGAAGCTAAGAAATACACACCGATCGACTTGTTTCGCACACCAAAGCTGAGAAAATGGACGGCGATTATCTGCTATCAGTGGTTTGTCGTGGCGCTGGTCTTTTTCGGGATGTTTATATTCGTCTCTCAACTGGTTGGCGATATTTACGTCAATTATACCATCATGATGGTTGTTACAACTCTCAGGATACCTATCACCTGGATCCTTTACCTTAAATTTGGTCGCCGAATTTGCCATGCAATTATCATGATCGTGGTAGGGATTACCTTCTCACTGGTTTTGCTGGTGTACCAAGATTCTCCCTCGGCAACAACAGCGTTGTCTCTTTTTGGATACCTTATGATTGACTGCACTTGGACGAGTGTTTATCTGATGACGTCTGAGCTCTTTCCAACCGTTTTGAGGAACACAGCTCAAGGAACAGGATCTATGAGCGCTCGGGTTGGTGGAATCTTAGCTCCATACGTCGCTTTGATGGGTCAGTTACCAGGTCTCAGCATTGCCTTTCCAGCAATCATTTTTGGTGTCGTCGCAGTTCTTGCTGGGATATTGATGTACTGGATTCCAGAGACGCTCTTCTCACCCATGCACCAAACCATCGAAGAAACAGAAGCAGCTGAAGATGATTATGGGATACCTTGCTGTGGCAAAAGGTTTAATCTACAACGAAAGCAAGAGGCTGAAGAAAACAATGCGGTACAGCGAAAGAAGAATGGCGGACAGTAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9VCA2	Organic cation transporter protein OS=Drosophila melanogaster OX=7227 GN=Orct PE=1 SV=1
Q8HY24	Organic anion transporter 3 OS=Oryctolagus cuniculus OX=9986 GN=SLC22A8 PE=2 SV=1
Q66J52	Solute carrier family 22 member 6-B OS=Xenopus laevis OX=8355 GN=slc22a6-b PE=2 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000335 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00083 all species →	Sugar_tr	Sugar (and other) transporter	Family	Interproscan
PF10551 all species →	MULE	MULE transposase domain	Domain	Interproscan
PF13148 all species →	DUF3987	Protein of unknown function (DUF3987)	Family	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036259 all species →	Homologous_superfamily	MFS transporter superfamily	Interproscan
IPR005828 all species →	Family	Major facilitator, sugar transporter-like	Interproscan
IPR018289 all species →	Domain	MULE transposase domain	Interproscan
IPR020846 all species →	Domain	Major facilitator superfamily domain	Interproscan
IPR025048 all species →	Family	Protein of unknown function DUF3987)	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24064 all species →	SOLUTE CARRIER FAMILY 22 MEMBER	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016020 all species →	Cellular Component	membrane	Interproscan
GO:0022857 all species →	Molecular Function	transmembrane transporter activity	Interproscan
GO:0055085 all species →	Biological Process	transmembrane transport	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K08202	SLC22A4_5, OCTN; MFS transporter, OCT family, solute carrier family 22 (organic cation transporter), member 4/5	-	Transporters	ko02000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.