Gene detail

Detailed information of evm.model.Ap2.3288 in Astrangia poculata

Genomic Location: Ap2:33297545...33300176
NR annotation: XP_020611997.1, serine/threonine-protein phosphatase 6 regulatory ankyrin repeat subunit B-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.3288

atgacgcctttacttgaggcggcaaaatcaaacagtatccacgcagcccaggtgttgttagaacatggtgctgagttggaagtcgaaaatgcgttgggtcaaaaccccctttttctgaaggagcttgtgggatttccaatggccccctttttagaacagggaagcagtgttcaacaaaggacaaaggggaaaaaaccccttaatacttggttgaaagtctgccccaaagacacaaaaggtttagcattggctggtaacgcaggttgtatagagtgtctccttcagcaaggtgcggacgtgggagccttggacagggagaatcgcacccctctccatgcagctgctaagggaggctacagcaattcccttgaattgttgattcaacatggtgctgatattcatttaactgataacatgggctggcttcctttgcactttgctgctgcacaaggacgatcgaatgcggccaacgttttattgcaaaatgggagtgatataacaaccatcgacaacaaggggagaaccgttttctatctggcggcaggaagcggggaaaaaaacttggttgacgttcttattcatcatggcagcgacattaacgcaaaggattttggcgccgtagacggatgcgatttgcggacctggaactggaacattgtggaggtgtatcttgagaatgggggtgacaaggacgctgttgatggggtaacaggtcgaacaactcttcattttgctgcaatatgcagggatgccattactttggacaggcttgtaaaccaaggattggagcttgaggcaaaagacaggaatggagaaacagctctacacagggcagcagcacgaggaactccagagatgatacaacgactggttgatagaggagcagacttaactgcccttaacaacagaggacagacgccattacttgtcagcttggctgccaacagcaaggaatgttccgagattttactgaaacatggaagcaacgtgcaagtgaaagataaaaatgccaacacggctcttcattttgctgtagctgagatcgattttgtcaaaataataatcaaacaaggtggagatgttaatgcagtgaatgaagatggttgcactcctcttcatcaagctgctctccacacgtactcaagttcggctaccgtgaaggctttgttgaaagcaggggccaatgtacattgccaggataagctaggatatacgcctcttcaccttgctcttgctggaggcaaggatgacattgtcagcctgctacttaagaaaggaagtgatgtcaatattacgaatatacagggaagaacgtccctgcatttgacaagttttggcgcttatggtattgtggaaaaattcattctgcatggaggtaatgtcaacgctgtcgatgagttaggatgtaccccacttcatcttgctgttcattcaaatgacaggaagctaaccaaagctctgttgaagcatggtggcgatcctaaaggtgcagattataaaggcagtacacctctgcatgtgggctgctgttcagggagcatggaagctgtctcagttgtgatttatcaaggaagtaaactcgaagcaagggatgctaaaggctgcactccacttcacatctgcgcagtttttgatcagaaacccactgcccgtgtacttgttgcaagcggagcggatgtggaggctacagacaatgaaggaagcacacccctccatctggcttcagccttcagtgatgtgcacatggctcgcctgtttcttgaacacgaagcgagtgtgaagacaagagattttgaaggcagcattgctcttcacacagttgctgcacttggaaagacagaaatcgtgcgtgtcttaattgatgcaggcagtgatgtcaatgcgcttgatgctagtggaaacacaccgctgcacgtgtctgcaggctcaggtcacatggacgttgctcgcctgcttctcgatgttggagcaaatttgtatgcagttaacaaggaagggttaaccccggctggatgcgcaagactattcgagcacaagcaagtgaaacattgtattgaggaaagacgctgctaa

Transcript

evm.model.Ap2.3288

ATGACGCCTTTACTTGAGGCGGCAAAATCAAACAGTATCCACGCAGCCCAGGTGTTGTTAGAACATGGTGCTGAGTTGGAAGTCGAAAATGCGTTGGGTCAAAACCCCCTTTTTCTGAAGGAGCTTGTGGGATTTCCAATGGCCCCCTTTTTAGAACAGGGAAGCAGTGTTCAACAAAGGACAAAGGGGAAAAAACCCCTTAATACTTGGTTGAAAGTCTGCCCCAAAGACACAAAAGGTTTAGCATTGGCTGGTAACGCAGGTTGTATAGAGTGTCTCCTTCAGCAAGGTGCGGACGTGGGAGCCTTGGACAGGGAGAATCGCACCCCTCTCCATGCAGCTGCTAAGGGAGGCTACAGCAATTCCCTTGAATTGTTGATTCAACATGGTGCTGATATTCATTTAACTGATAACATGGGCTGGCTTCCTTTGCACTTTGCTGCTGCACAAGGACGATCGAATGCGGCCAACGTTTTATTGCAAAATGGGAGTGATATAACAACCATCGACAACAAGGGGAGAACCGTTTTCTATCTGGCGGCAGGAAGCGGGGAAAAAAACTTGGTTGACGTTCTTATTCATCATGGCAGCGACATTAACGCAAAGGATTTTGGCGCCGTAGACGGATGCGATTTGCGGACCTGGAACTGGAACATTGTGGAGGTGTATCTTGAGAATGGGGGTGACAAGGACGCTGTTGATGGGGTAACAGGTCGAACAACTCTTCATTTTGCTGCAATATGCAGGGATGCCATTACTTTGGACAGGCTTGTAAACCAAGGATTGGAGCTTGAGGCAAAAGACAGGAATGGAGAAACAGCTCTACACAGGGCAGCAGCACGAGGAACTCCAGAGATGATACAACGACTGGTTGATAGAGGAGCAGACTTAACTGCCCTTAACAACAGAGGACAGACGCCATTACTTGTCAGCTTGGCTGCCAACAGCAAGGAATGTTCCGAGATTTTACTGAAACATGGAAGCAACGTGCAAGTGAAAGATAAAAATGCCAACACGGCTCTTCATTTTGCTGTAGCTGAGATCGATTTTGTCAAAATAATAATCAAACAAGGTGGAGATGTTAATGCAGTGAATGAAGATGGTTGCACTCCTCTTCATCAAGCTGCTCTCCACACGTACTCAAGTTCGGCTACCGTGAAGGCTTTGTTGAAAGCAGGGGCCAATGTACATTGCCAGGATAAGCTAGGATATACGCCTCTTCACCTTGCTCTTGCTGGAGGCAAGGATGACATTGTCAGCCTGCTACTTAAGAAAGGAAGTGATGTCAATATTACGAATATACAGGGAAGAACGTCCCTGCATTTGACAAGTTTTGGCGCTTATGGTATTGTGGAAAAATTCATTCTGCATGGAGGTAATGTCAACGCTGTCGATGAGTTAGGATGTACCCCACTTCATCTTGCTGTTCATTCAAATGACAGGAAGCTAACCAAAGCTCTGTTGAAGCATGGTGGCGATCCTAAAGGTGCAGATTATAAAGGCAGTACACCTCTGCATGTGGGCTGCTGTTCAGGGAGCATGGAAGCTGTCTCAGTTGTGATTTATCAAGGAAGTAAACTCGAAGCAAGGGATGCTAAAGGCTGCACTCCACTTCACATCTGCGCAGTTTTTGATCAGAAACCCACTGCCCGTGTACTTGTTGCAAGCGGAGCGGATGTGGAGGCTACAGACAATGAAGGAAGCACACCCCTCCATCTGGCTTCAGCCTTCAGTGATGTGCACATGGCTCGCCTGTTTCTTGAACACGAAGCGAGTGTGAAGACAAGAGATTTTGAAGGCAGCATTGCTCTTCACACAGTTGCTGCACTTGGAAAGACAGAAATCGTGCGTGTCTTAATTGATGCAGGCAGTGATGTCAATGCGCTTGATGCTAGTGGAAACACACCGCTGCACGTGTCTGCAGGCTCAGGTCACATGGACGTTGCTCGCCTGCTTCTCGATGTTGGAGCAAATTTGTATGCAGTTAACAAGGAAGGGTTAACCCCGGCTGGATGCGCAAGACTATTCGAGCACAAGCAAGTGAAACATTGTATTGAGGAAAGACGCTGCTAA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0015257 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13637 all species →	Ank_4	Ankyrin repeats (many copies)	Repeat	Interproscan
PF12796 all species →	Ank_2	Ankyrin repeats (3 copies)	Repeat	Interproscan
PF00023 all species →	Ank	Ankyrin repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR002110 all species →	Repeat	Ankyrin repeat	Interproscan
IPR036770 all species →	Homologous_superfamily	Ankyrin repeat-containing domain superfamily	Interproscan
IPR050745 all species →	Family	Multifunctional regulatory proteins	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24189 all species →	MYOTROPHIN	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0005634 all species →	Cellular Component	nucleus	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.3288.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.