Gene detail

Detailed information of evm.model.Ap2.3295 in Astrangia poculata

Genomic Location: Ap2:33385731...33399469
NR annotation: XP_027058444.1, coagulation factor XIII A chain-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.3295

acctcggcttatactctatcaggacgaccatatgattattccaggccgacggaatcatcgaggcccaccggatattcttcgtattctacggactcttcccgaccagtaacgagttcaaggtactcaacttccgctgcaggctctcgtcttgtatcgtcggctgaaggaagtgcaagaaattcaggaaagactgttaaaggctttcatatccggaaatgtttgagtagttataaagaaggcatctgttctggttgcgtgtatcagaagaaaatcaatgtgctacttgaagctcacggaattatcggatttcagaagaaaattgattcactagtgttgattcaggaagaaacagtcatggtcgattttcatgccatcaaatgtttcgaaaagctctttctgcccctttatgattatgattatgatgatgatgatgatgatgatgatgatgatggtgataaatttatggctgaggcggaacgagtaagatgtgggttgcttggcgacggagacggtggtcgtgcaaacgtgatatcggataaagaattccgggacaagaacaaggcgctttcgacgtcaaaccagcaaaaacatgccgaactgcttacaaccaaggacattgaactgcacaaggacgagaatcgccgcgctcaccacaccgacaaatacgagcattctaacttgattgtgagaaggggccagagtttcgacgtcactttgaccttcaacagagcttatgaggccttgaaggatacaatcatcttgcagtttgtggttggtttccgaccgcaagaaagcaaaggctccatcatccgggtaccagtgaagctaaccaaagaatatatgtacggcgcatggtcagtagtgtttgcacaggtcaacagtgaaaacgtgcgtcttcgagtaacaccgccagcggatgccgtagtgggtagatatcagttttatgtagaaactaagagcgacgtgcctggtacagaaaaacagccagagtttcgttatcagtatccagaggaaatgattgtcttgtttaatccgtggtgcaaagaggacacagtgtatctagaccaggaagcctcgcgcgaagaatacgtactcaatgacagcgggcgcatttggatgggaactgctaagaaaaactttggaatgccatggaacttcggccagttcgaagatgtatcgttgaattcttgtttgtggctgttggaaagagcacagcttgctaccgcggcgcgtgcaaatcctctgagagtcacacggtgtatctctgccatggcaaactttaacgatcaagatggcggagttctgttcggtcgctgggacggcaagtaccccagggataccactcctccaacggcatggtctggcagtgtcgctatcttggagcaattctggcagaagaagaatgttgtcaggtttgctcagtgctgggtcttttcaggacttgttactacattgttgagggcgataggcatacccacccggtcagtaacaaactttgcatctgcgcatgactcagatgccagcatgacaattgatttccatttcgacgaagatggaaagccgctcaaggaactggacgattctatttggaactttcacgtgtggaacgagtcatggttcaagcgtcctgatttgccagacggtcatgatggatggcaggctcatgatgccacaccacaagagacaagctatggagtatttcgctgtgggccagcttcagtgaaagcggtcaaacaaggagaggtgtatctacccttcgatacaagcttcgtgtttgctgaagtgaatggtgaccgtgtgttttgggaagtggaagagaatggtcaaatgaatgtgatcagagtggataaaaagtgcattggaaagatgatcagcaccaaagctgttggcagcgacaagagggacgacattactcacgagtataaacatcctgaaggctccattcaagaacgccgtgcagtagaaatggcgtacaaatacagcagccgtaaagatcaagccatttatggacttccaacagaggacgtgaagttctcttttgaactaccagatgatgtgcccattgggaaggacgtcagcgtggcactgaagatgaaaaacaccacgtacaaaagtcgtacagtccggggtaagattacaggcatgattggtttctacacgggaatatcctgcaaggatttgaaggaggaagcatttgaattcaccgtggaaccaaggcaagagagaagctttgtcctggatttcccagccgccttgtatcttgacaagtgtgaagcggatggagggctcaaggtttatgtcaaggcaacagtgaaggaaaatggccagcggttcgcttcgtacgacacggtagactttcagaaacccgacttgaacatgacgattactcgcggtgaagctagagtaggcaaagactttgaggttaagttgtcgttcataaatcctttgccagttaaaatcacaggaggacagtggtacattgagacttcaggagctaatccaaagtcgaaaaaaattcccaatagcgcaactgtcccagaaggaaaagaagttcagacatctttcaaattgacaccttaccgcgtgggactgtgccgagtgtctgccactttcagagccgacatgctcagcggtgttcgaggatcgggcggcatgcaagttttggaataa

Transcript

evm.model.Ap2.3295

GACCTCGGCTTATACTCTATCAGGACGACCATATGATTATTCCAGGCCGACGGAATCATCGAGGCCCACCGGATATTCTTCGTATTCTACGGACTCTTCCCGACCAGTAACGAGTTCAAGGTACTCAACTTCCGCTGCAGGCTCTCGTCTTGTATCGTCGGCTGAAGGAAGTGCAAGAAATTCAGGAAAGACTGTTAAAGGCTTTCATATCCGGAAATGTTTGAGTAGTTATAAAGAAGGCATCTGTTCTGGTTGCGTGTATCAGAAGAAAATCAATGTGCTACTTGAAGCTCACGGAATTATCGGATTTCAGAAGAAAATTGATTCACTAGTGTTGATTCAGGAAGAAACAGTCATGGTCGATTTTCATGCCATCAAATGTTTCGAAAAGCTCTTTCTGCCCCTTTATGATTATGATTATGATGATGATGATGATGATGATGATGATGATGGTGATAAATTTATGGCTGAGGCGGAACGAGTAAGATGTGGGTTGCTTGGCGACGGAGACGGTGGTCGTGCAAACGTGATATCGGATAAAGAATTCCGGGACAAGAACAAGGCGCTTTCGACGTCAAACCAGCAAAAACATGCCGAACTGCTTACAACCAAGGACATTGAACTGCACAAGGACGAGAATCGCCGCGCTCACCACACCGACAAATACGAGCATTCTAACTTGATTGTGAGAAGGGGCCAGAGTTTCGACGTCACTTTGACCTTCAACAGAGCTTATGAGGCCTTGAAGGATACAATCATCTTGCAGTTTGTGGTTGGTTTCCGACCGCAAGAAAGCAAAGGCTCCATCATCCGGGTACCAGTGAAGCTAACCAAAGAATATATGTACGGCGCATGGTCAGTAGTGTTTGCACAGGTCAACAGTGAAAACGTGCGTCTTCGAGTAACACCGCCAGCGGATGCCGTAGTGGGTAGATATCAGTTTTATGTAGAAACTAAGAGCGACGTGCCTGGTACAGAAAAACAGCCAGAGTTTCGTTATCAGTATCCAGAGGAAATGATTGTCTTGTTTAATCCGTGGTGCAAAGAGGACACAGTGTATCTAGACCAGGAAGCCTCGCGCGAAGAATACGTACTCAATGACAGCGGGCGCATTTGGATGGGAACTGCTAAGAAAAACTTTGGAATGCCATGGAACTTCGGCCAGTTCGAAGATGTATCGTTGAATTCTTGTTTGTGGCTGTTGGAAAGAGCACAGCTTGCTACCGCGGCGCGTGCAAATCCTCTGAGAGTCACACGGTGTATCTCTGCCATGGCAAACTTTAACGATCAAGATGGCGGAGTTCTGTTCGGTCGCTGGGACGGCAAGTACCCCAGGGATACCACTCCTCCAACGGCATGGTCTGGCAGTGTCGCTATCTTGGAGCAATTCTGGCAGAAGAAGAATGTTGTCAGGTTTGCTCAGTGCTGGGTCTTTTCAGGACTTGTTACTACATTGTTGAGGGCGATAGGCATACCCACCCGGTCAGTAACAAACTTTGCATCTGCGCATGACTCAGATGCCAGCATGACAATTGATTTCCATTTCGACGAAGATGGAAAGCCGCTCAAGGAACTGGACGATTCTATTTGGAACTTTCACGTGTGGAACGAGTCATGGTTCAAGCGTCCTGATTTGCCAGACGGTCATGATGGATGGCAGGCTCATGATGCCACACCACAAGAGACAAGCTATGGAGTATTTCGCTGTGGGCCAGCTTCAGTGAAAGCGGTCAAACAAGGAGAGGTGTATCTACCCTTCGATACAAGCTTCGTGTTTGCTGAAGTGAATGGTGACCGTGTGTTTTGGGAAGTGGAAGAGAATGGTCAAATGAATGTGATCAGAGTGGATAAAAAGTGCATTGGAAAGATGATCAGCACCAAAGCTGTTGGCAGCGACAAGAGGGACGACATTACTCACGAGTATAAACATCCTGAAGGCTCCATTCAAGAACGCCGTGCAGTAGAAATGGCGTACAAATACAGCAGCCGTAAAGATCAAGCCATTTATGGACTTCCAACAGAGGACGTGAAGTTCTCTTTTGAACTACCAGATGATGTGCCCATTGGGAAGGACGTCAGCGTGGCACTGAAGATGAAAAACACCACGTACAAAAGTCGTACAGTCCGGGGTAAGATTACAGGCATGATTGGTTTCTACACGGGAATATCCTGCAAGGATTTGAAGGAGGAAGCATTTGAATTCACCGTGGAACCAAGGCAAGAGAGAAGCTTTGTCCTGGATTTCCCAGCCGCCTTGTATCTTGACAAGTGTGAAGCGGATGGAGGGCTCAAGGTTTATGTCAAGGCAACAGTGAAGGAAAATGGCCAGCGGTTCGCTTCGTACGACACGGTAGACTTTCAGAAACCCGACTTGAACATGACGATTACTCGCGGTGAAGCTAGAGTAGGCAAAGACTTTGAGGTTAAGTTGTCGTTCATAAATCCTTTGCCAGTTAAAATCACAGGAGGACAGTGGTACATTGAGACTTCAGGAGCTAATCCAAAGTCGAAAAAAATTCCCAATAGCGCAACTGTCCCAGAAGGAAAAGAAGTTCAGACATCTTTCAAATTGACACCTTACCGCGTGGGACTGTGCCGAGTGTCTGCCACTTTCAGAGCCGACATGCTCAGCGGTGTTCGAGGATCGGGCGGCATGCAAGTTTTGGAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P22735	Protein-glutamine gamma-glutamyltransferase K OS=Homo sapiens OX=9606 GN=TGM1 PE=1 SV=4
P22758	Protein-glutamine gamma-glutamyltransferase K OS=Oryctolagus cuniculus OX=9986 GN=TGM1 PE=2 SV=2
P23606	Protein-glutamine gamma-glutamyltransferase K OS=Rattus norvegicus OX=10116 GN=Tgm1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000881 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00927 all species →	Transglut_C	Transglutaminase family, C-terminal ig like domain	Domain	Interproscan
PF01841 all species →	Transglut_core	Transglutaminase-like superfamily	Family	Interproscan
PF00868 all species →	Transglut_N	Transglutaminase family	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR036238 all species →	Homologous_superfamily	Transglutaminase, C-terminal domain superfamily	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR008958 all species →	Domain	Transglutaminase, C-terminal	Interproscan
IPR002931 all species →	Domain	Transglutaminase-like	Interproscan
IPR050779 all species →	Family	Protein-glutamine gamma-glutamyltransferases	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR036985 all species →	Homologous_superfamily	Transglutaminase-like superfamily	Interproscan
IPR001102 all species →	Domain	Transglutaminase, N-terminal	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11590 all species →	PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003810 all species →	Molecular Function	protein-glutamine gamma-glutamyltransferase activity	Interproscan
GO:0018149 all species →	Biological Process	peptide cross-linking	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K05619	TGM1; transglutaminase 1	EC:2.3.2.13	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.