Gene detail

Detailed information of evm.model.Ap2.3302 in Astrangia poculata

Genomic Location: Ap2:33462052...33473713
NR annotation: XP_027058446.1, protein-glutamine gamma-glutamyltransferase K-like [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.3302

atgtcgcacgtacgcgtacgctataaaaaagtcagggcaaccaacagtgtcttggagccaggaaacgtaaaacccaaagctgatcagttgaaggcgcaaaaagtgaatttacataaaaaagaaaacagagaagctcataaaactaatgaatacgagattgatcaactgatacttaggagagggcagccttttgacgtcactgtgacatttaacagagactacaatccacagaccgatgtcattacattgcagttcgtcactggtaagaatcctcagcaaagcaaaggcggtggaattgtgcgagtcaaaaaacaagacacactcatcctttcaaagtggggatggcaggtcaaagaagccaacggaaatacagttcgcctgtcaatcatgtcttcatgtcaagctgcgattggctattacgatgtgatggttgagacaaagtccaagaactcctctggagaagaatctctgcatcgacacaaacataaagaacagatttgtatattgttcaatgcgtggtgtcaagacgatgtggtgtacatggaaaacaatgaagatcttgatctggatgttgaggaatatgtgctaaaggaagccggtcatatttggaggggtagctggagaagatttacaaaaataccctggaactttggacagtttgatgatgtggttttaaaatccgctctgtggttgctagacaaagcagaactcagccctaagtcgatgtctaacgtaatccatgtggttcgaaccatgacatccatggccaactctgcggatcgtggcggagtcttggaaggccgctgggcagacgatttcccagacggcaaagttccctggcattggagtggaagtgttgaaattctggaacaattttgtaacacaaaggagactgtaaaatacgggcagtgttgggtgttttctggacttctgacttccttgttacgagcattaggaataccaacaagaagcgtgacaaactttgagtcagcacacgacacagagaaaagtttaactattgattaccactttgacgcggacggaaaagccgagaaaagctataacaacgattcagtgtggaactatcacgtgtggaacgagtgctggtttaaacggcttgatcttccagatggtcatgatggatggcaagctattgatggaacccctcaggagcagagtggaggtaaaaatgctgctgtttatgttcttactttagtcacaaaagtaaatgcaaggtgtatatatcagtgtggaccagcctcggtgaatgccatcaagaacggggaggtatacctccattatgatacggacttcattttcgctgaagtgaatgccgacaaagtttattgggaagttcccttcttcgacggcgagttgaggacaattcagatagacgagaagtcaactgggaaatacatcagtactcgaaagcctggaaagataacagtaagaagcgaccttacaaaccactacaaacatccagaaggttcagatgcggagaggaaagtggtggaatttgtaaacaaatttagttccaaaaaagatctcgaaatctacgaccctgccgtgaaagatgtcacttgcaaacttgacgtggttgatgaagtcaaaattggagacgcgttaaaggccaatgcaacttcaaagaacgaatcaagcgaaaaaagaacggtcactagtgattttacagccatattggtgcattacactggacgagcggctaaaactctaaaagaacaaaaaaccactgttgtcttggaaccaggcgaagataccactgacatgagaaggttgttgttgttgttgttaatctctggtgcacatgaaaaaagtgtcattctagacatttcaactcatgaattgctgggcaagtcagctgtaccagacgccagtatcaagatatttattagaggttcagtggatgaaacagatcagcgttttgcccttcaagatgtggtcgaatttttgaagccagaattggaagtcacggttcttacaactcctttggagttaaataaagacgttacagtgtcagtgtccttaacaaacccgttaccgattgacctgacgaacgggaaattccactttgagttcagccggaatatggagccgaaaacaatggttgttgattgcaagggcccagtacgtgctaacgagaagaccgagataactgcaaccttcgttgcggtgaaaagactaggatttcgtagcgtctcggttaactttaactcaagtgaaatcactggaatagctggagatggatacatctatgtgtccaaatag

Transcript

evm.model.Ap2.3302

ATGTCGCACGTACGCGTACGCTATAAAAAAGTCAGGGCAACCAACAGTGTCTTGGAGCCAGGAAACGTAAAACCCAAAGCTGATCAGTTGAAGGCGCAAAAAGTGAATTTACATAAAAAAGAAAACAGAGAAGCTCATAAAACTAATGAATACGAGATTGATCAACTGATACTTAGGAGAGGGCAGCCTTTTGACGTCACTGTGACATTTAACAGAGACTACAATCCACAGACCGATGTCATTACATTGCAGTTCGTCACTGGTAAGAATCCTCAGCAAAGCAAAGGCGGTGGAATTGTGCGAGTCAAAAAACAAGACACACTCATCCTTTCAAAGTGGGGATGGCAGGTCAAAGAAGCCAACGGAAATACAGTTCGCCTGTCAATCATGTCTTCATGTCAAGCTGCGATTGGCTATTACGATGTGATGGTTGAGACAAAGTCCAAGAACTCCTCTGGAGAAGAATCTCTGCATCGACACAAACATAAAGAACAGATTTGTATATTGTTCAATGCGTGGTGTCAAGACGATGTGGTGTACATGGAAAACAATGAAGATCTTGATCTGGATGTTGAGGAATATGTGCTAAAGGAAGCCGGTCATATTTGGAGGGGTAGCTGGAGAAGATTTACAAAAATACCCTGGAACTTTGGACAGTTTGATGATGTGGTTTTAAAATCCGCTCTGTGGTTGCTAGACAAAGCAGAACTCAGCCCTAAGTCGATGTCTAACGTAATCCATGTGGTTCGAACCATGACATCCATGGCCAACTCTGCGGATCGTGGCGGAGTCTTGGAAGGCCGCTGGGCAGACGATTTCCCAGACGGCAAAGTTCCCTGGCATTGGAGTGGAAGTGTTGAAATTCTGGAACAATTTTGTAACACAAAGGAGACTGTAAAATACGGGCAGTGTTGGGTGTTTTCTGGACTTCTGACTTCCTTGTTACGAGCATTAGGAATACCAACAAGAAGCGTGACAAACTTTGAGTCAGCACACGACACAGAGAAAAGTTTAACTATTGATTACCACTTTGACGCGGACGGAAAAGCCGAGAAAAGCTATAACAACGATTCAGTGTGGAACTATCACGTGTGGAACGAGTGCTGGTTTAAACGGCTTGATCTTCCAGATGGTCATGATGGATGGCAAGCTATTGATGGAACCCCTCAGGAGCAGAGTGGAGGTAAAAATGCTGCTGTTTATGTTCTTACTTTAGTCACAAAAGTAAATGCAAGGTGTATATATCAGTGTGGACCAGCCTCGGTGAATGCCATCAAGAACGGGGAGGTATACCTCCATTATGATACGGACTTCATTTTCGCTGAAGTGAATGCCGACAAAGTTTATTGGGAAGTTCCCTTCTTCGACGGCGAGTTGAGGACAATTCAGATAGACGAGAAGTCAACTGGGAAATACATCAGTACTCGAAAGCCTGGAAAGATAACAGTAAGAAGCGACCTTACAAACCACTACAAACATCCAGAAGGTTCAGATGCGGAGAGGAAAGTGGTGGAATTTGTAAACAAATTTAGTTCCAAAAAAGATCTCGAAATCTACGACCCTGCCGTGAAAGATGTCACTTGCAAACTTGACGTGGTTGATGAAGTCAAAATTGGAGACGCGTTAAAGGCCAATGCAACTTCAAAGAACGAATCAAGCGAAAAAAGAACGGTCACTAGTGATTTTACAGCCATATTGGTGCATTACACTGGACGAGCGGCTAAAACTCTAAAAGAACAAAAAACCACTGTTGTCTTGGAACCAGGCGAAGATACCACTGACATGAGAAGGTTGTTGTTGTTGTTGTTAATCTCTGGTGCACATGAAAAAAGTGTCATTCTAGACATTTCAACTCATGAATTGCTGGGCAAGTCAGCTGTACCAGACGCCAGTATCAAGATATTTATTAGAGGTTCAGTGGATGAAACAGATCAGCGTTTTGCCCTTCAAGATGTGGTCGAATTTTTGAAGCCAGAATTGGAAGTCACGGTTCTTACAACTCCTTTGGAGTTAAATAAAGACGTTACAGTGTCAGTGTCCTTAACAAACCCGTTACCGATTGACCTGACGAACGGGAAATTCCACTTTGAGTTCAGCCGGAATATGGAGCCGAAAACAATGGTTGTTGATTGCAAGGGCCCAGTACGTGCTAACGAGAAGACCGAGATAACTGCAACCTTCGTTGCGGTGAAAAGACTAGGATTTCGTAGCGTCTCGGTTAACTTTAACTCAAGTGAAATCACTGGAATAGCTGGAGATGGATACATCTATGTGTCCAAATAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
P22758	Protein-glutamine gamma-glutamyltransferase K OS=Oryctolagus cuniculus OX=9986 GN=TGM1 PE=2 SV=2
P22735	Protein-glutamine gamma-glutamyltransferase K OS=Homo sapiens OX=9606 GN=TGM1 PE=1 SV=4
P23606	Protein-glutamine gamma-glutamyltransferase K OS=Rattus norvegicus OX=10116 GN=Tgm1 PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000881 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01841 all species →	Transglut_core	Transglutaminase-like superfamily	Family	Interproscan
PF00868 all species →	Transglut_N	Transglutaminase family	Domain	Interproscan
PF00927 all species →	Transglut_C	Transglutaminase family, C-terminal ig like domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR002931 all species →	Domain	Transglutaminase-like	Interproscan
IPR036985 all species →	Homologous_superfamily	Transglutaminase-like superfamily	Interproscan
IPR001102 all species →	Domain	Transglutaminase, N-terminal	Interproscan
IPR008958 all species →	Domain	Transglutaminase, C-terminal	Interproscan
IPR038765 all species →	Homologous_superfamily	Papain-like cysteine peptidase superfamily	Interproscan
IPR036238 all species →	Homologous_superfamily	Transglutaminase, C-terminal domain superfamily	Interproscan
IPR050779 all species →	Family	Protein-glutamine gamma-glutamyltransferases	Interproscan
IPR023608 all species →	Family	Protein-glutamine gamma-glutamyltransferase, animal	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11590 all species →	PROTEIN-GLUTAMINE GAMMA-GLUTAMYLTRANSFERASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0018149 all species →	Biological Process	peptide cross-linking	Interproscan
GO:0003810 all species →	Molecular Function	protein-glutamine gamma-glutamyltransferase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.3302.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.