Gene detail

Detailed information of evm.model.Ap2.3308_evm.model.Ap2.3309 in Astrangia poculata

Genomic Location: Ap2:33582243...33593467
NR annotation: KAJ7377336.1, positive regulation of DNA endoreduplication [Desmophyllum pertusum]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.3308_evm.model.Ap2.3309

atggaatcaaaatcagtcgtattaactcctgaaggctgggatagcgagcagacaacaaacacagatcatatcggcttcgctagcgattgtgatgataccgagagtgagtgtaatagttcatcgcaatcgattccgttgcgtcgatatccttcgttggcggagctttcttctatagctacaaactgtggaggaactaatatggtttctgatgaattaccaatacaagagaaacaacttatgccagcgccaactgtcgaggattgcaaaaatcaaattacaagtcagctgaataatatttggaaccaagcacctcctgctaccccaccaaaggtcgttgatacgtcaaagaactcgacaaatcaaaccagtgacgatccactgactcctacagctaatcttaaaatgcttgttagtgctgctagtccggcaattcgtgatagagaaatcaagaaacgagaactgtttcctggggaaagttttaacaccttcgagtcgcttcacacggcagcaaatgcgcttatttcaaattcaagacagtctgaagcgttcggaggcgacaaaactgtaaatgaagactccagtcaggtcgattttggagggaacaagatcactataagtcgaaaagacaaatcgcttggtcttctatgccagaagtttctgtctaaatatccagagtacccaaagctgaatcagtttattgagattggtctagatgatgtggccaaagatcttagtgtggaacgaagacgtatatatgacattgttaatgttttagaaagtgtggaagtaataagcagatacgcaaagaacagatacgtttggcatggcaaatcaagacttccctctactctcataaaacttaagaattatgctgtatcaaaagggctgaagttaaagccctcgccttcaggaaaagaaaacccaaagcacaaagaaatgaagaaggaaaaggcaaaggttccagttactccagtactacccacccagctgccattaatactcccaaaggattccaatctcatgtctattgtccaagcgttaacacctaaaatgccctcactggataacaaccttatgccaccaccagcaaacatgccagaaaatattgcagaggataatgctagtaaaaagcttaaatttaaagatagtgaatactgcagaaaagacaagtcattaggagtccttagccaaaaattcttaatgatgtttttggtctctgagacaagatatgtgacactggaggatgcagcaaatgtacttataggtgaagaggaagaaggccagacaaaatacaaaaccaaagttcgacgactgtatgacattgccaacattctgtcaagccttcagttgattgagaaagtccacatacacagtattcaaactggcaggaaacctggcttcagatggattggaatagatcctgataaattggaattactggtagccaatacccaagacgaaactcaaaacccaccagctgtaaagagagtatgtgctgcaacaaaaagcacagctatgcaacttgatgaagaagaagaaagcgccgtaggacgctttatcagacggagaccgagtcagcagcagctcagagcgcgattggaagacactgaagcaagcaaaagcaagctgccgcgttcacgatctgagagagttttaagcacgaagaaaagagatcaacgtgatagcgaggaagatggcttttcagttcaagagttgacagcttcattcaatgccgatccatcaatagccagtccaacagaagccaagttccgtgctgagttgaagaaacttcaccagcaataccctaatcgtatgtctcagctactttccgcttgtagacacgcggatgattttgatgcaaggaaaagtcggcgttccctgttcatgtcaggaaaaacggaactcgaagatgccccggagccgaagcgacgacgaagtgccgacgacgtgtcatcgatcaaacaagaaaccgatggtggattttcgcactcgtcaaattcaccgtttaaaagcattcaagatgaaaagaagggcccgtcagtaagcagtccaaaacaggcaagccctagtggaaagtttaatcagtcgtcacctgagcaaaagattcttctagaaaggcaaaaacaacagaaacttttagaagagcagcaaggattcgattcgcaggatgagcgctggaagcgcatagaacgcgagctggagaaagcctttcccaaaggaggacccagtcgccccatgatggttcatcagtcatcatcgccattgccgtatgacgcgcttgtagagcagtcttctgtcgctattcaagccagtcttatcgacgacttgagccctctcaaaccacttagctactactgcaaggtcaagtccccttggaagaacaccgaatctatacagagctcctgtccggcgtcggcaacgccctcgcccgtcccgtttcagaatggatctgcattgaattcgttcaacccgcacgcgatgtcaccggtgcccattcttcccgccactgaacgtccgtccaatgttagtaacgcgtgcccaagcaatgctttctttttccaagtccccgtctcagcggcgaacggcgcgtcagtagtgtgggctacacccaccccaccctccggtcactcgacaccttcacctgaccagctcatcaagatggcggcgcaacctgtcaacacaccggtgctgtacagtcccaggtctctcacgcctactccagagcctgctcatccggatacatccctgttttccaccgtgtctgacaaacagcaagcgatcctcacaccggctttggtaacaatgggagattctcaacaagttggcgccgtgcaacaggccttatctattcaagttccaactatgcctcatgtaagcaacactgaattgtactcagtaactcctataccgggaaccatgacttcgttgcagttcacgactccactggttaaagtaacggacataaacaatgttgttcccatggaaacacctactagcacagtccagctactaagagatgtctctaaacgtctgtcacttcctttttccggtgatcaatccatttag

Transcript

evm.model.Ap2.3308_evm.model.Ap2.3309

ATGGAATCAAAATCAGTCGTATTAACTCCTGAAGGCTGGGATAGCGAGCAGACAACAAACACAGATCATATCGGCTTCGCTAGCGATTGTGATGATACCGAGAGTGAGTGTAATAGTTCATCGCAATCGATTCCGTTGCGTCGATATCCTTCGTTGGCGGAGCTTTCTTCTATAGCTACAAACTGTGGAGGAACTAATATGGTTTCTGATGAATTACCAATACAAGAGAAACAACTTATGCCAGCGCCAACTGTCGAGGATTGCAAAAATCAAATTACAAGTCAGCTGAATAATATTTGGAACCAAGCACCTCCTGCTACCCCACCAAAGGTCGTTGATACGTCAAAGAACTCGACAAATCAAACCAGTGACGATCCACTGACTCCTACAGCTAATCTTAAAATGCTTGTTAGTGCTGCTAGTCCGGCAATTCGTGATAGAGAAATCAAGAAACGAGAACTGTTTCCTGGGGAAAGTTTTAACACCTTCGAGTCGCTTCACACGGCAGCAAATGCGCTTATTTCAAATTCAAGACAGTCTGAAGCGTTCGGAGGCGACAAAACTGTAAATGAAGACTCCAGTCAGGTCGATTTTGGAGGGAACAAGATCACTATAAGTCGAAAAGACAAATCGCTTGGTCTTCTATGCCAGAAGTTTCTGTCTAAATATCCAGAGTACCCAAAGCTGAATCAGTTTATTGAGATTGGTCTAGATGATGTGGCCAAAGATCTTAGTGTGGAACGAAGACGTATATATGACATTGTTAATGTTTTAGAAAGTGTGGAAGTAATAAGCAGATACGCAAAGAACAGATACGTTTGGCATGGCAAATCAAGACTTCCCTCTACTCTCATAAAACTTAAGAATTATGCTGTATCAAAAGGGCTGAAGTTAAAGCCCTCGCCTTCAGGAAAAGAAAACCCAAAGCACAAAGAAATGAAGAAGGAAAAGGCAAAGGTTCCAGTTACTCCAGTACTACCCACCCAGCTGCCATTAATACTCCCAAAGGATTCCAATCTCATGTCTATTGTCCAAGCGTTAACACCTAAAATGCCCTCACTGGATAACAACCTTATGCCACCACCAGCAAACATGCCAGAAAATATTGCAGAGGATAATGCTAGTAAAAAGCTTAAATTTAAAGATAGTGAATACTGCAGAAAAGACAAGTCATTAGGAGTCCTTAGCCAAAAATTCTTAATGATGTTTTTGGTCTCTGAGACAAGATATGTGACACTGGAGGATGCAGCAAATGTACTTATAGGTGAAGAGGAAGAAGGCCAGACAAAATACAAAACCAAAGTTCGACGACTGTATGACATTGCCAACATTCTGTCAAGCCTTCAGTTGATTGAGAAAGTCCACATACACAGTATTCAAACTGGCAGGAAACCTGGCTTCAGATGGATTGGAATAGATCCTGATAAATTGGAATTACTGGTAGCCAATACCCAAGACGAAACTCAAAACCCACCAGCTGTAAAGAGAGTATGTGCTGCAACAAAAAGCACAGCTATGCAACTTGATGAAGAAGAAGAAAGCGCCGTAGGACGCTTTATCAGACGGAGACCGAGTCAGCAGCAGCTCAGAGCGCGATTGGAAGACACTGAAGCAAGCAAAAGCAAGCTGCCGCGTTCACGATCTGAGAGAGTTTTAAGCACGAAGAAAAGAGATCAACGTGATAGCGAGGAAGATGGCTTTTCAGTTCAAGAGTTGACAGCTTCATTCAATGCCGATCCATCAATAGCCAGTCCAACAGAAGCCAAGTTCCGTGCTGAGTTGAAGAAACTTCACCAGCAATACCCTAATCGTATGTCTCAGCTACTTTCCGCTTGTAGACACGCGGATGATTTTGATGCAAGGAAAAGTCGGCGTTCCCTGTTCATGTCAGGAAAAACGGAACTCGAAGATGCCCCGGAGCCGAAGCGACGACGAAGTGCCGACGACGTGTCATCGATCAAACAAGAAACCGATGGTGGATTTTCGCACTCGTCAAATTCACCGTTTAAAAGCATTCAAGATGAAAAGAAGGGCCCGTCAGTAAGCAGTCCAAAACAGGCAAGCCCTAGTGGAAAGTTTAATCAGTCGTCACCTGAGCAAAAGATTCTTCTAGAAAGGCAAAAACAACAGAAACTTTTAGAAGAGCAGCAAGGATTCGATTCGCAGGATGAGCGCTGGAAGCGCATAGAACGCGAGCTGGAGAAAGCCTTTCCCAAAGGAGGACCCAGTCGCCCCATGATGGTTCATCAGTCATCATCGCCATTGCCGTATGACGCGCTTGTAGAGCAGTCTTCTGTCGCTATTCAAGCCAGTCTTATCGACGACTTGAGCCCTCTCAAACCACTTAGCTACTACTGCAAGGTCAAGTCCCCTTGGAAGAACACCGAATCTATACAGAGCTCCTGTCCGGCGTCGGCAACGCCCTCGCCCGTCCCGTTTCAGAATGGATCTGCATTGAATTCGTTCAACCCGCACGCGATGTCACCGGTGCCCATTCTTCCCGCCACTGAACGTCCGTCCAATGTTAGTAACGCGTGCCCAAGCAATGCTTTCTTTTTCCAAGTCCCCGTCTCAGCGGCGAACGGCGCGTCAGTAGTGTGGGCTACACCCACCCCACCCTCCGGTCACTCGACACCTTCACCTGACCAGCTCATCAAGATGGCGGCGCAACCTGTCAACACACCGGTGCTGTACAGTCCCAGGTCTCTCACGCCTACTCCAGAGCCTGCTCATCCGGATACATCCCTGTTTTCCACCGTGTCTGACAAACAGCAAGCGATCCTCACACCGGCTTTGGTAACAATGGGAGATTCTCAACAAGTTGGCGCCGTGCAACAGGCCTTATCTATTCAAGTTCCAACTATGCCTCATGTAAGCAACACTGAATTGTACTCAGTAACTCCTATACCGGGAACCATGACTTCGTTGCAGTTCACGACTCCACTGGTTAAAGTAACGGACATAAACAATGTTGTTCCCATGGAAACACCTACTAGCACAGTCCAGCTACTAAGAGATGTCTCTAAACGTCTGTCACTTCCTTTTTCCGGTGATCAATCCATTTAG

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
D4A4D7	Transcription factor E2F7 OS=Rattus norvegicus OX=10116 GN=E2f7 PE=3 SV=1
Q6S7F2	Transcription factor E2F7 OS=Mus musculus OX=10090 GN=E2f7 PE=1 SV=1
Q5RIX9	Transcription factor E2F7 OS=Danio rerio OX=7955 GN=e2f7 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0003793 (this species only)
Transcription factor family	E2F · all TF in this species

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF02319 all species →	E2F_TDP	E2F/DP family winged-helix DNA-binding domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR003316 all species →	Domain	E2F/DP family, winged-helix DNA-binding domain	Interproscan
IPR036388 all species →	Homologous_superfamily	Winged helix-like DNA-binding domain superfamily	Interproscan
IPR036390 all species →	Homologous_superfamily	Winged helix DNA-binding domain superfamily	Interproscan
IPR015633 all species →	Family	E2F Family	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR12081 all species →	TRANSCRIPTION FACTOR E2F	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0005667 all species →	Cellular Component	transcription regulator complex	Interproscan
GO:0006355 all species →	Biological Process	regulation of DNA-templated transcription	Interproscan
GO:0000978 all species →	Molecular Function	RNA polymerase II cis-regulatory region sequence-specific DNA binding	Interproscan
GO:0000981 all species →	Molecular Function	DNA-binding transcription factor activity, RNA polymerase II-specific	Interproscan
GO:0006357 all species →	Biological Process	regulation of transcription by RNA polymerase II	Interproscan
GO:0090575 all species →	Cellular Component	RNA polymerase II transcription regulator complex	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K09391	E2F7_8; transcription factor E2F7/8	-	Transcription factors	ko03000	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.