Gene detail

Detailed information of evm.model.Ap2.3464 in Astrangia poculata

Genomic Location: Ap2:35407234...35419545
NR annotation: XP_020608349.1, uncharacterized protein LOC110046980 [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.3464

atgccagtgcatgccaatgatgatattatttgtagtcacaggctccatagcatgggatgtggatcaagtacttatccagcagatcttacaaatgatgacggccttggaaataatgtcgaagatgcaaacaggaacacaaaaccagtgagaagagataataacaagcaacagcaagagattatacatgcagcgtcaaaggtagaggaagtaggagtgcaagaaaaacatgcgccaagtcagacaccaaaaaaactggatgttgctaaaacattggaccagaatgagctaacaaaatcagaagacgagtcagctagtaacaaagtacagaacagtaaaagtgttactgcagctgcaacagaacagtccaatgaaaataacaaagatacaaatgctgagaaagtgctgcaggctgcatatcaaggggagtcgtgtacagtattgagcaggattcagggagataaaaatgcaacaagtgctaaagataaagttacagcaactgatcagaataaaagtggagactctatacctggcaaagatggcagttgcagtagaactgatcaggtgaaaaaggctacacatgatgaaaaggatttgaccatagacaggacaactgcaacatcttttgacccagacatttgtgaagacaaaaaccttagtagtaataatgaaaaaactgaagaggaaaaagaaaaagagccaacaaacagtgctataattacatgtaatgctgcagaaacaacagctgaaaaatctttttctctggacacagagcttcaagtatcagaaaatcaatcagattctgttgataaagcaagtgacccccatcctggcccctgtgttaactccaaccaaggatatattaatgaaatggcattggatcaagggcaagtttctaaaacaaactttgcgacagtcttacaaactactgataatcttgaggatcctgaccaaagtaaaaacaatttggttcaggaagaagatgagcccaaacaaaagtcaacagatgaaactgctgtggaaatgaaaagtgaaaaatccagtgatgaatatgaaagcaagttgaaacctgaatcaaccttgccgcaatctgatgacaccacaagcagtgaagctttaatggcagagaccttggagattagtgcagaaaagaattctgaactgagctgtatgttaccacaacaagaaataaacacaaatgcgaataatgattcaagcactgctgcaattccttgtggagaaagacatcaaccccagatggaagattcaggcagtctttcggtcactgatgaagtaaagagcaatgaaactgaagcttcacactccatgccatccagagacataaatgctgaaaacaagctgataacagcattgcggctttcctgcaaactatcacccgggcatcttgttaaagaccttgatgttaaaggtgtgatgtcaattcacttaatgcgttcactctcaccaggggtagtgacagtagcagagttagtgcggaagcttgtttgtttgactgaacttgatctatctggaaatctacttgggccacaaggatttcgtgttatttgtctggctcttaggaagaatacaactttaaagtgcttgaacttagcaaacaacttagcagacactgatagttctgagtgcataggcataatgttatctactaacagcactttggagagactggatgtctcaggaaataacctgggcagtgactatttttcacggtgtgttggcccagcactgaggataaacaaatcgttgaaagctttgaagttttccagttgtggctccagtgatgtgtcagctatttgtgaagccattgctgaagacaatgtgactattgaggaacttgatacaagtaataaccatgttggagctgtgtttggtgagggcttgtcaaacattttgcagaaaccaggttgctgcttgcggcatcttgacatccacggcaccaaccttggaagggaaggaatgacagcattactagcgggaattcaacaaaacagttcacttgtcactctcaatgctgccggacatcaggtgtcttgtctgtcgtttttcatggagtttttgtacagctgtatgtgtcatcccactctagaggagctgatcattgacaataccaaagttcttgaacatgacgaatggcaacctcaaggtgtgtctgtaaccgagacaagttccaatctcaccaaactactcctgtcaggatgttctttgacaaaccaagcattaagaaccctgtctgaaaatacacaagaaaaattatcttgtcttgcttacatggatgtctccagcaacgaaaagcttactccggagtgcttatctagtgtttgtgccatgatgacttcttctacaggccaaagttgtcctttatctgttttggatttctcgttaaacgctgccgatgacattgctgttgaaatcaagaaactgccggaactaaaaaacctgaagtcgttgcatttaaagaaatgcagaattacaccgacgaacctagttgatctttctaggctcatcaccatgacaacgtccgatttcttgccactttcctccttgacgttggacggcatcaaactctcaggcacagatgccttgaaaggcatgctgggactgacagacacgtttatacccacaagtccctgcagcctggagctgctctgtctcgtggggtgtggcctgaacgatagagacgtcaaacctctgatgagcgccattcgtaatggactggttgtcaaagaactgaggctatcggcaaaccggctcactgatacagcagtgagctacttggtagatgactctgaaacgttgctttctcttcaagcgctggatctttctataaacaagattcgaaatggtggagctgagaaattagcagaagctttatccgaccaactggcgaacctcgagagcttgtcactggctgataactgtatcggtaaggcaggggtactggctttggtcggtaagataggtcccgcctctcaactggctgtattgaacctcaagagccaacaacaagcgttgggagaggaggatatggacgaaattatggaacaactggcaaaatcactagggtttgacccagaaaacagcgaagttttcgtaccagccttcgatcttccagcaaactttacaatcaatcttaccggactaggaggggaacccggtgaactgggaccaaaactcgacagtcaagccatacttacagattacagtttcaaacaccgcagaacattgaaacttaaagatgcgctccagctgtcagcggtcctgtcccaatcggaaaacacgagggctaagatgagtcagagtgactgggaccgagttatcagcgccgacaaagatgcgcccgcgtggctgcagctttcgtcacagcgtgaatgtgcggtgtacgtcagtaacttgccgctgagtgtgactgcagagaaactggaaggacagctggatagtgaagctgagtgcaacgttatggaagtttatctactcaaggatcagattctgaggaaaccaaatggtttagcttgggtcctatttacggacactgaatctgtgaaaagagcagtggaatactataactctgggcaggccttcatgtacggtacaccatttgtcatctcatccgtgactgttgatgttatagccgacacaggctctgaagaaaaaacagaagctaaagcaagacaagagatgatccaacgtgccgaagatcgcaaagcggatcaaactgctcatgcgcagctggttcagtcaaactataacgtgagtcttgcgcgtcacgagtatgcggcccagcatcccgcgtacgcagatggccgagtatggtga

Transcript

evm.model.Ap2.3464

ATGCCAGTGCATGCCAATGATGATATTATTTGTAGTCACAGGCTCCATAGCATGGGATGTGGATCAAGTACTTATCCAGCAGATCTTACAAATGATGACGGCCTTGGAAATAATGTCGAAGATGCAAACAGGAACACAAAACCAGTGAGAAGAGATAATAACAAGCAACAGCAAGAGATTATACATGCAGCGTCAAAGGTAGAGGAAGTAGGAGTGCAAGAAAAACATGCGCCAAGTCAGACACCAAAAAAACTGGATGTTGCTAAAACATTGGACCAGAATGAGCTAACAAAATCAGAAGACGAGTCAGCTAGTAACAAAGTACAGAACAGTAAAAGTGTTACTGCAGCTGCAACAGAACAGTCCAATGAAAATAACAAAGATACAAATGCTGAGAAAGTGCTGCAGGCTGCATATCAAGGGGAGTCGTGTACAGTATTGAGCAGGATTCAGGGAGATAAAAATGCAACAAGTGCTAAAGATAAAGTTACAGCAACTGATCAGAATAAAAGTGGAGACTCTATACCTGGCAAAGATGGCAGTTGCAGTAGAACTGATCAGGTGAAAAAGGCTACACATGATGAAAAGGATTTGACCATAGACAGGACAACTGCAACATCTTTTGACCCAGACATTTGTGAAGACAAAAACCTTAGTAGTAATAATGAAAAAACTGAAGAGGAAAAAGAAAAAGAGCCAACAAACAGTGCTATAATTACATGTAATGCTGCAGAAACAACAGCTGAAAAATCTTTTTCTCTGGACACAGAGCTTCAAGTATCAGAAAATCAATCAGATTCTGTTGATAAAGCAAGTGACCCCCATCCTGGCCCCTGTGTTAACTCCAACCAAGGATATATTAATGAAATGGCATTGGATCAAGGGCAAGTTTCTAAAACAAACTTTGCGACAGTCTTACAAACTACTGATAATCTTGAGGATCCTGACCAAAGTAAAAACAATTTGGTTCAGGAAGAAGATGAGCCCAAACAAAAGTCAACAGATGAAACTGCTGTGGAAATGAAAAGTGAAAAATCCAGTGATGAATATGAAAGCAAGTTGAAACCTGAATCAACCTTGCCGCAATCTGATGACACCACAAGCAGTGAAGCTTTAATGGCAGAGACCTTGGAGATTAGTGCAGAAAAGAATTCTGAACTGAGCTGTATGTTACCACAACAAGAAATAAACACAAATGCGAATAATGATTCAAGCACTGCTGCAATTCCTTGTGGAGAAAGACATCAACCCCAGATGGAAGATTCAGGCAGTCTTTCGGTCACTGATGAAGTAAAGAGCAATGAAACTGAAGCTTCACACTCCATGCCATCCAGAGACATAAATGCTGAAAACAAGCTGATAACAGCATTGCGGCTTTCCTGCAAACTATCACCCGGGCATCTTGTTAAAGACCTTGATGTTAAAGGTGTGATGTCAATTCACTTAATGCGTTCACTCTCACCAGGGGTAGTGACAGTAGCAGAGTTAGTGCGGAAGCTTGTTTGTTTGACTGAACTTGATCTATCTGGAAATCTACTTGGGCCACAAGGATTTCGTGTTATTTGTCTGGCTCTTAGGAAGAATACAACTTTAAAGTGCTTGAACTTAGCAAACAACTTAGCAGACACTGATAGTTCTGAGTGCATAGGCATAATGTTATCTACTAACAGCACTTTGGAGAGACTGGATGTCTCAGGAAATAACCTGGGCAGTGACTATTTTTCACGGTGTGTTGGCCCAGCACTGAGGATAAACAAATCGTTGAAAGCTTTGAAGTTTTCCAGTTGTGGCTCCAGTGATGTGTCAGCTATTTGTGAAGCCATTGCTGAAGACAATGTGACTATTGAGGAACTTGATACAAGTAATAACCATGTTGGAGCTGTGTTTGGTGAGGGCTTGTCAAACATTTTGCAGAAACCAGGTTGCTGCTTGCGGCATCTTGACATCCACGGCACCAACCTTGGAAGGGAAGGAATGACAGCATTACTAGCGGGAATTCAACAAAACAGTTCACTTGTCACTCTCAATGCTGCCGGACATCAGGTGTCTTGTCTGTCGTTTTTCATGGAGTTTTTGTACAGCTGTATGTGTCATCCCACTCTAGAGGAGCTGATCATTGACAATACCAAAGTTCTTGAACATGACGAATGGCAACCTCAAGGTGTGTCTGTAACCGAGACAAGTTCCAATCTCACCAAACTACTCCTGTCAGGATGTTCTTTGACAAACCAAGCATTAAGAACCCTGTCTGAAAATACACAAGAAAAATTATCTTGTCTTGCTTACATGGATGTCTCCAGCAACGAAAAGCTTACTCCGGAGTGCTTATCTAGTGTTTGTGCCATGATGACTTCTTCTACAGGCCAAAGTTGTCCTTTATCTGTTTTGGATTTCTCGTTAAACGCTGCCGATGACATTGCTGTTGAAATCAAGAAACTGCCGGAACTAAAAAACCTGAAGTCGTTGCATTTAAAGAAATGCAGAATTACACCGACGAACCTAGTTGATCTTTCTAGGCTCATCACCATGACAACGTCCGATTTCTTGCCACTTTCCTCCTTGACGTTGGACGGCATCAAACTCTCAGGCACAGATGCCTTGAAAGGCATGCTGGGACTGACAGACACGTTTATACCCACAAGTCCCTGCAGCCTGGAGCTGCTCTGTCTCGTGGGGTGTGGCCTGAACGATAGAGACGTCAAACCTCTGATGAGCGCCATTCGTAATGGACTGGTTGTCAAAGAACTGAGGCTATCGGCAAACCGGCTCACTGATACAGCAGTGAGCTACTTGGTAGATGACTCTGAAACGTTGCTTTCTCTTCAAGCGCTGGATCTTTCTATAAACAAGATTCGAAATGGTGGAGCTGAGAAATTAGCAGAAGCTTTATCCGACCAACTGGCGAACCTCGAGAGCTTGTCACTGGCTGATAACTGTATCGGTAAGGCAGGGGTACTGGCTTTGGTCGGTAAGATAGGTCCCGCCTCTCAACTGGCTGTATTGAACCTCAAGAGCCAACAACAAGCGTTGGGAGAGGAGGATATGGACGAAATTATGGAACAACTGGCAAAATCACTAGGGTTTGACCCAGAAAACAGCGAAGTTTTCGTACCAGCCTTCGATCTTCCAGCAAACTTTACAATCAATCTTACCGGACTAGGAGGGGAACCCGGTGAACTGGGACCAAAACTCGACAGTCAAGCCATACTTACAGATTACAGTTTCAAACACCGCAGAACATTGAAACTTAAAGATGCGCTCCAGCTGTCAGCGGTCCTGTCCCAATCGGAAAACACGAGGGCTAAGATGAGTCAGAGTGACTGGGACCGAGTTATCAGCGCCGACAAAGATGCGCCCGCGTGGCTGCAGCTTTCGTCACAGCGTGAATGTGCGGTGTACGTCAGTAACTTGCCGCTGAGTGTGACTGCAGAGAAACTGGAAGGACAGCTGGATAGTGAAGCTGAGTGCAACGTTATGGAAGTTTATCTACTCAAGGATCAGATTCTGAGGAAACCAAATGGTTTAGCTTGGGTCCTATTTACGGACACTGAATCTGTGAAAAGAGCAGTGGAATACTATAACTCTGGGCAGGCCTTCATGTACGGTACACCATTTGTCATCTCATCCGTGACTGTTGATGTTATAGCCGACACAGGCTCTGAAGAAAAAACAGAAGCTAAAGCAAGACAAGAGATGATCCAACGTGCCGAAGATCGCAAAGCGGATCAAACTGCTCATGCGCAGCTGGTTCAGTCAAACTATAACGTGAGTCTTGCGCGTCACGAGTATGCGGCCCAGCATCCCGCGTACGCAGATGGCCGAGTATGGTGA

Protein

UniProt (Swiss-Prot top hit)

No Swiss-Prot hit above the reporting threshold for this gene.

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0011366 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13516 all species →	LRR_6	Leucine Rich repeat	Repeat	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR032675 all species →	Homologous_superfamily	Leucine-rich repeat domain superfamily	Interproscan
IPR000504 all species →	Domain	RNA recognition motif domain	Interproscan
IPR006553 all species →	Repeat	Leucine-rich repeat, cysteine-containing subtype	Interproscan
IPR012677 all species →	Homologous_superfamily	Nucleotide-binding alpha-beta plait domain superfamily	Interproscan
IPR001611 all species →	Repeat	Leucine-rich repeat	Interproscan
IPR035979 all species →	Homologous_superfamily	RNA-binding domain superfamily	Interproscan
IPR052201 all species →	Family	Leucine-rich repeat-containing regulator of pluripotency	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR24111 all species →	LEUCINE-RICH REPEAT-CONTAINING PROTEIN 34	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003723 all species →	Molecular Function	RNA binding	Interproscan
GO:0005515 all species →	Molecular Function	protein binding	Interproscan
GO:0003676 all species →	Molecular Function	nucleic acid binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.3464.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.