Gene detail

Detailed information of evm.model.Ap2.3491 in Astrangia poculata

Genomic Location: Ap2:35680726...35695054
NR annotation: XP_020608476.1, protein mesh-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.3491

atgagtgcgcctcttaaactcatcatcatgttggcctttgtcgcaattcttctggacgctgccggtggttcatactcctcgaagttatatccgtttggaaaagacgctggtgatttgcatttacccgtcaaagacgacgtcagttcagacatgatttcaacaccgccatttccgttctttggattgcaagtcagcacgttatatgtaagtattaggtgtgaaaacatggtccacgaaaatggactcatttcgtttggttctactttgaaagaccaaacagcaggaagattcccgctgaccaataaagaacatgcagcagcaccatattgggctgacgtatacacggaaagaggcggtagaatctggtaccgaaaaacaactgatgacgtcatcatatccagggcgacgagagacgtcatcagggcatttccacggtacactggatttatggcaagttgggtagctctagtcacatggaatgaagtaactttctatggagctagcggtacccacatacagaaaagaaacacatttcaagttctgataacaagtgatggcgttatgtcattcgttggatatatctacgataaactttcatggacgactggaaggatggatggagcagatgtaaatggtttagggggaaagccagcacaggttggctttagctatgagtactcgtactataagttaccggtctcagggaccagcgacgtcttgagcctcgttaacacaagtaactgcggccgaccaggtgtgtggttattcagagtggataacgtcaataagattgacgaaaagaggtgtgaaagaaagggtactgtatcaatttatccgtccggtggaacagtacacagtgggaccaatattctcgtcagtggtctttgttatcgtcctggtgctgaggttcgatgtgattttggtgaggcaggcatcgtcgtaggccggagaattaacgaaacgaaagcaatttgttctgtgccgttgataaccacgagtaaacaagtcacgctttttgtttataccagtaaacatgctaaatcaaagattgcacaaatattcgacttagagccaaccaatttttttgatgcattagttcaaagaggtgaccctacaatctggacgttaggtacccgagtagacatctcttgggattatcaagagctggccgctgaacaggctgtatcagtagagattataaatttctttgatgatcaagatggaatcaacgttcacagcaatattaccgtcgtcagccaacaaccaaatacaggaaaagctgtgtttgacctgccgaacatgaagaatttgagtaggaactgggaccacaatgcatcaaaaatgttacaaatgattcaagtgagaagcatacaaagcaatacctacaacaaatatgtgcccaaggaatggattgggagtgatatcttccatttgacaagtcaagtattggcgaataaaagttgcacagactggatgcagacccaagcaaataaattgccccttatggagggttatagtcgcttgactccttgcccaaagactcgaagacagatggaagcggatttgggacgtttcgcgatctgcgagttgtgcgatacacagacgttgcccctgtgtaagatctatttcaagaatgtggacatctgttacagaacaaaacaattgagtgctaaaggattacaatggaaatgttgctatgacaacaatggagagttaactgcaggcccattcagtggaatcaccaaccctgacccagacgtatcgacattatcactattttggaaggacgtcctcccgtacatagaatgctgcgtgttttcagacaactgcttcaagtaccaagagctggggacatctgggtcgcgatacattcctccaaacattggcaagtatgacttgtatgatttagtaccgatcagaatattaggggcgtcatttggtgatcctcatatcataactttcgatggtgtggagtatacgttcaatggatttggcgagtacacagttcttagcgtcaacaccactcagttcattcttcaaggaagaatgcagcctttgaacggtggacacaacggaaaatcaccagctacagtattcactgcgtttgcaatgaagcaacaaggcggaagtttgattgaagtacaacaaaatgagcaccaatcaatagatgttcttatagacggaacaccaagcgttatagactatggccacgagctgcaatcaacaggagtgtttatcaaaaacagctcgcgagaaaattatccaagagttatacttgccttcagttctgggattaccgtgtatgtagaaaatgctgcagttcttcagatggcagtagctgtaccagttgagtttaaaggaacaacaagcggactccttggctattgggatgataacagtgacaaggagtatctactgccgaacaacgtatttctcagcacagcatctaccatgtcggaaatacatcatagctttggtcagcagtgggccacagacgaaagcgattccctgttcacctacagtccaggagaaaatcacagggactatttcgacacttcttatcttccaacgttcatggagggctatgatcctatcattgccaagatggacaaggaagcaagaaagagagcccttatgacgtgcgagcactcatttcagtgcatattcgacatcgcgattacaggaagattagatgttggcaaagctaccaaggatttccaggaatggttattaggcatcaaaagaaacctccacgatgaaggatgcagcgtagttttaagccttgtgggaggatccgtacaaacaaacgtcacgggtgaccttgtaacgcactatttcaaatgtgaccatggttacgctatggctggtaaggaaagaatttcttgccgcggagggttctgggatggatcaaaacctatctgctatcgagtctcgttgccctgccggccactgatgatttcgtttcctaacggcgacgttcatggtcaaggaagtatgctcggcgaccgatacaaattcaagtgtaacccgccgttcacgctcatcgggaaagaggaaatcgtctgtggtcaagatggtctgtggagtgggaaagttccattttgtcaaataagaaactgctctcaagtaagtataaagaatgctaaagtgatcgttgaaaatgaaggccacgtcgtcgttaaatgtaatgagggatacactctgattggttccagtgtaataagctgcctgcctaacgggttactgaatggaacgttaccctcatgtgccagagaacagttcaggacagctcctgcagatgagaagggcattccctccgtcgtcatcgtgattggagtagttgttattatcatcattattatcgtagttgtggtgacaatttacctggtgcgtaaacatcgcaggcggaaagctactcaagaacgaaagaagccggtggacgcccaggaagaggtatcagcttga

Transcript

evm.model.Ap2.3491

ATGAGTGCGCCTCTTAAACTCATCATCATGTTGGCCTTTGTCGCAATTCTTCTGGACGCTGCCGGTGGTTCATACTCCTCGAAGTTATATCCGTTTGGAAAAGACGCTGGTGATTTGCATTTACCCGTCAAAGACGACGTCAGTTCAGACATGATTTCAACACCGCCATTTCCGTTCTTTGGATTGCAAGTCAGCACGTTATATGTAAGTATTAGGTGTGAAAACATGGTCCACGAAAATGGACTCATTTCGTTTGGTTCTACTTTGAAAGACCAAACAGCAGGAAGATTCCCGCTGACCAATAAAGAACATGCAGCAGCACCATATTGGGCTGACGTATACACGGAAAGAGGCGGTAGAATCTGGTACCGAAAAACAACTGATGACGTCATCATATCCAGGGCGACGAGAGACGTCATCAGGGCATTTCCACGGTACACTGGATTTATGGCAAGTTGGGTAGCTCTAGTCACATGGAATGAAGTAACTTTCTATGGAGCTAGCGGTACCCACATACAGAAAAGAAACACATTTCAAGTTCTGATAACAAGTGATGGCGTTATGTCATTCGTTGGATATATCTACGATAAACTTTCATGGACGACTGGAAGGATGGATGGAGCAGATGTAAATGGTTTAGGGGGAAAGCCAGCACAGGTTGGCTTTAGCTATGAGTACTCGTACTATAAGTTACCGGTCTCAGGGACCAGCGACGTCTTGAGCCTCGTTAACACAAGTAACTGCGGCCGACCAGGTGTGTGGTTATTCAGAGTGGATAACGTCAATAAGATTGACGAAAAGAGGTGTGAAAGAAAGGGTACTGTATCAATTTATCCGTCCGGTGGAACAGTACACAGTGGGACCAATATTCTCGTCAGTGGTCTTTGTTATCGTCCTGGTGCTGAGGTTCGATGTGATTTTGGTGAGGCAGGCATCGTCGTAGGCCGGAGAATTAACGAAACGAAAGCAATTTGTTCTGTGCCGTTGATAACCACGAGTAAACAAGTCACGCTTTTTGTTTATACCAGTAAACATGCTAAATCAAAGATTGCACAAATATTCGACTTAGAGCCAACCAATTTTTTTGATGCATTAGTTCAAAGAGGTGACCCTACAATCTGGACGTTAGGTACCCGAGTAGACATCTCTTGGGATTATCAAGAGCTGGCCGCTGAACAGGCTGTATCAGTAGAGATTATAAATTTCTTTGATGATCAAGATGGAATCAACGTTCACAGCAATATTACCGTCGTCAGCCAACAACCAAATACAGGAAAAGCTGTGTTTGACCTGCCGAACATGAAGAATTTGAGTAGGAACTGGGACCACAATGCATCAAAAATGTTACAAATGATTCAAGTGAGAAGCATACAAAGCAATACCTACAACAAATATGTGCCCAAGGAATGGATTGGGAGTGATATCTTCCATTTGACAAGTCAAGTATTGGCGAATAAAAGTTGCACAGACTGGATGCAGACCCAAGCAAATAAATTGCCCCTTATGGAGGGTTATAGTCGCTTGACTCCTTGCCCAAAGACTCGAAGACAGATGGAAGCGGATTTGGGACGTTTCGCGATCTGCGAGTTGTGCGATACACAGACGTTGCCCCTGTGTAAGATCTATTTCAAGAATGTGGACATCTGTTACAGAACAAAACAATTGAGTGCTAAAGGATTACAATGGAAATGTTGCTATGACAACAATGGAGAGTTAACTGCAGGCCCATTCAGTGGAATCACCAACCCTGACCCAGACGTATCGACATTATCACTATTTTGGAAGGACGTCCTCCCGTACATAGAATGCTGCGTGTTTTCAGACAACTGCTTCAAGTACCAAGAGCTGGGGACATCTGGGTCGCGATACATTCCTCCAAACATTGGCAAGTATGACTTGTATGATTTAGTACCGATCAGAATATTAGGGGCGTCATTTGGTGATCCTCATATCATAACTTTCGATGGTGTGGAGTATACGTTCAATGGATTTGGCGAGTACACAGTTCTTAGCGTCAACACCACTCAGTTCATTCTTCAAGGAAGAATGCAGCCTTTGAACGGTGGACACAACGGAAAATCACCAGCTACAGTATTCACTGCGTTTGCAATGAAGCAACAAGGCGGAAGTTTGATTGAAGTACAACAAAATGAGCACCAATCAATAGATGTTCTTATAGACGGAACACCAAGCGTTATAGACTATGGCCACGAGCTGCAATCAACAGGAGTGTTTATCAAAAACAGCTCGCGAGAAAATTATCCAAGAGTTATACTTGCCTTCAGTTCTGGGATTACCGTGTATGTAGAAAATGCTGCAGTTCTTCAGATGGCAGTAGCTGTACCAGTTGAGTTTAAAGGAACAACAAGCGGACTCCTTGGCTATTGGGATGATAACAGTGACAAGGAGTATCTACTGCCGAACAACGTATTTCTCAGCACAGCATCTACCATGTCGGAAATACATCATAGCTTTGGTCAGCAGTGGGCCACAGACGAAAGCGATTCCCTGTTCACCTACAGTCCAGGAGAAAATCACAGGGACTATTTCGACACTTCTTATCTTCCAACGTTCATGGAGGGCTATGATCCTATCATTGCCAAGATGGACAAGGAAGCAAGAAAGAGAGCCCTTATGACGTGCGAGCACTCATTTCAGTGCATATTCGACATCGCGATTACAGGAAGATTAGATGTTGGCAAAGCTACCAAGGATTTCCAGGAATGGTTATTAGGCATCAAAAGAAACCTCCACGATGAAGGATGCAGCGTAGTTTTAAGCCTTGTGGGAGGATCCGTACAAACAAACGTCACGGGTGACCTTGTAACGCACTATTTCAAATGTGACCATGGTTACGCTATGGCTGGTAAGGAAAGAATTTCTTGCCGCGGAGGGTTCTGGGATGGATCAAAACCTATCTGCTATCGAGTCTCGTTGCCCTGCCGGCCACTGATGATTTCGTTTCCTAACGGCGACGTTCATGGTCAAGGAAGTATGCTCGGCGACCGATACAAATTCAAGTGTAACCCGCCGTTCACGCTCATCGGGAAAGAGGAAATCGTCTGTGGTCAAGATGGTCTGTGGAGTGGGAAAGTTCCATTTTGTCAAATAAGAAACTGCTCTCAAGTAAGTATAAAGAATGCTAAAGTGATCGTTGAAAATGAAGGCCACGTCGTCGTTAAATGTAATGAGGGATACACTCTGATTGGTTCCAGTGTAATAAGCTGCCTGCCTAACGGGTTACTGAATGGAACGTTACCCTCATGTGCCAGAGAACAGTTCAGGACAGCTCCTGCAGATGAGAAGGGCATTCCCTCCGTCGTCATCGTGATTGGAGTAGTTGTTATTATCATCATTATTATCGTAGTTGTGGTGACAATTTACCTGGTGCGTAAACATCGCAGGCGGAAAGCTACTCAAGAACGAAAGAAGCCGGTGGACGCCCAGGAAGAGGTATCAGCTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
H9JIQ1	Protein mesh OS=Bombyx mori OX=7091 PE=1 SV=1
Q0KHY3	Protein mesh OS=Drosophila melanogaster OX=7227 GN=mesh PE=1 SV=2
P34501	Defecation cycle abnormal dec-7 OS=Caenorhabditis elegans OX=6239 GN=dec-7 PE=1 SV=2

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000637 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00084 all species →	Sushi	Sushi repeat (SCR repeat)	Domain	Interproscan
PF06119 all species →	NIDO	Nidogen-like	Family	Interproscan
PF03782 all species →	AMOP	AMOP domain	Domain	Interproscan
PF00094 all species →	VWD	von Willebrand factor type D domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000436 all species →	Domain	Sushi/SCR/CCP domain	Interproscan
IPR035976 all species →	Homologous_superfamily	Sushi/SCR/CCP superfamily	Interproscan
IPR003886 all species →	Domain	NIDO domain	Interproscan
IPR051495 all species →	Family	Epithelial Barrier and Cell Signaling Protein	Interproscan
IPR005533 all species →	Domain	AMOP domain	Interproscan
IPR014756 all species →	Homologous_superfamily	Immunoglobulin E-set	Interproscan
IPR013783 all species →	Homologous_superfamily	Immunoglobulin-like fold	Interproscan
IPR001846 all species →	Domain	von Willebrand factor, type D domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR13802 all species →	MUCIN 4-RELATED	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0007160 all species →	Biological Process	cell-matrix adhesion	Interproscan
GO:0005615 all species →	Cellular Component	extracellular space	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K23820	SUSD2; sushi domain-containing protein 2	-	Domain-containing proteins not elsewhere classified	ko04990	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.