Gene detail

Detailed information of evm.model.Ap2.3509 in Astrangia poculata

Genomic Location: Ap2:35875955...35879146
NR annotation: XP_044169548.1, uncharacterized protein K02A2.6-like [Acropora millepora]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.3509

atgtcaagtgtatatttgagcgatacacaaggtttaaagccatttgactgtaccgaaactgctggtatttctgcacgctgggaaagatggctgcgagcttttgaattgtatgctgcgggaaaaggagttaagaatgtcgatcagaagaaggctttattgctgcatactgctggtttaagtgttcaagatatttatttcacgttgaacgaagaaggaggaacagatagttatcagaaagtaaaggcgaccttgaataaatatttcaaaccgcaagcgaatgttccgtatgaaaggctttgttttcgtgagacgagtcaactggccaacgaaaccatcgaacagtttgtgatcagattgagacagaaagcccaaacctgtgaatttggagacggcgctgctgtggatgaacaaattcgtgatcaagtgattagcaagtgtttgtcacacgaactccgtcgaaaattacttcagaaaggtcgagccttgacactgccacaattaagagaaattgcccggtctatggaagaatctgagaaacaggcacgaatcgaaggagcaagtggcgaggtcagtagtgaggtgaatagtgtgagtggaaagtctgattacaaaggggatgcgagcacaaggaatgtgaaatgtttttgttgtggaaatgtgggacataaagctaatgatcaccgatgcccagcgagagggaaacagtgcagatggtgtaagggaactggacattttgaagctgtgtgtaaaactaagaagaagcaaaacactggtcgtggaagtggaggagctagaggaccacgaagaccagatgccagaagaaaggatggtccgcctcaccatgtaaggcaagtagaagctgaagataagcagagtgatgacagtgaatatgcctttggcatttcagacgattgtaatgtttcaagtgatggcaaaatttctgtgaaaataggaggtttgccagtaacaatgattattgattcgggagctagttgcaatgtcataggtcgtaatgtgtgggagtatctgaaagcaaataaggttgaatgtgtgtcgagcaaggtgtccaagaagttatttgcatatggtagtaatcatccattacaagttgcaggcacatttactgcagaagtgtctgttggagatagagtgttgagtggggttgaatttgttgttattgaaaatgagggacacgccctccttgggcgagaaactgccattgccttagaagttttgaagctgggtcctcaagttaactcactaaaggtatctacagatggagcagaaggggtaccaagcatttttgaaaaatttcccggatgttgtgaaggtattggcaaattgaaggattttcagctaaaagtcccaattgattcagaggtacaacccattgcacaaccaattagacgagttccataccaccttcgtgataagctgagtgacaaactggatgaacttgttaagctagacataattgagaaagtgagtggtccaagttcgtgggtatcaccagtggtagtcgtacccaagccctcaggtgacatccgtttgtgtgtcgatatgcgtcaagccaacatggcagtaaagcgggaacgttacccaatacccaccatcgatgaagttttacaagatttgaatcagagcaagtttttcagcaaattggatctcaactctgcctaccatcagatagagctgtcacctgaatcaagagatatcactacattttgcacacataagggactgtaccgatacaagcgtctcatgttcggtataagttgtgcgcctgaaatgtaccagaaggttctccagcaagttctgcaagattgtgatggcgcccataacatccttgatgatgtgatagtgcatgcagccactgaggaggagcatgacagaagatttgagaatgtggtccgagtattgagcagcaaggggttgacattgaaccgcgacaagtgtcaatttaagatgtcgcatttggaattcatgggccatgtgttgtcagcacgtggaattggtccagcggatgttaaaccgattctttga

Transcript

evm.model.Ap2.3509

ATGTCAAGTGTATATTTGAGCGATACACAAGGTTTAAAGCCATTTGACTGTACCGAAACTGCTGGTATTTCTGCACGCTGGGAAAGATGGCTGCGAGCTTTTGAATTGTATGCTGCGGGAAAAGGAGTTAAGAATGTCGATCAGAAGAAGGCTTTATTGCTGCATACTGCTGGTTTAAGTGTTCAAGATATTTATTTCACGTTGAACGAAGAAGGAGGAACAGATAGTTATCAGAAAGTAAAGGCGACCTTGAATAAATATTTCAAACCGCAAGCGAATGTTCCGTATGAAAGGCTTTGTTTTCGTGAGACGAGTCAACTGGCCAACGAAACCATCGAACAGTTTGTGATCAGATTGAGACAGAAAGCCCAAACCTGTGAATTTGGAGACGGCGCTGCTGTGGATGAACAAATTCGTGATCAAGTGATTAGCAAGTGTTTGTCACACGAACTCCGTCGAAAATTACTTCAGAAAGGTCGAGCCTTGACACTGCCACAATTAAGAGAAATTGCCCGGTCTATGGAAGAATCTGAGAAACAGGCACGAATCGAAGGAGCAAGTGGCGAGGTCAGTAGTGAGGTGAATAGTGTGAGTGGAAAGTCTGATTACAAAGGGGATGCGAGCACAAGGAATGTGAAATGTTTTTGTTGTGGAAATGTGGGACATAAAGCTAATGATCACCGATGCCCAGCGAGAGGGAAACAGTGCAGATGGTGTAAGGGAACTGGACATTTTGAAGCTGTGTGTAAAACTAAGAAGAAGCAAAACACTGGTCGTGGAAGTGGAGGAGCTAGAGGACCACGAAGACCAGATGCCAGAAGAAAGGATGGTCCGCCTCACCATGTAAGGCAAGTAGAAGCTGAAGATAAGCAGAGTGATGACAGTGAATATGCCTTTGGCATTTCAGACGATTGTAATGTTTCAAGTGATGGCAAAATTTCTGTGAAAATAGGAGGTTTGCCAGTAACAATGATTATTGATTCGGGAGCTAGTTGCAATGTCATAGGTCGTAATGTGTGGGAGTATCTGAAAGCAAATAAGGTTGAATGTGTGTCGAGCAAGGTGTCCAAGAAGTTATTTGCATATGGTAGTAATCATCCATTACAAGTTGCAGGCACATTTACTGCAGAAGTGTCTGTTGGAGATAGAGTGTTGAGTGGGGTTGAATTTGTTGTTATTGAAAATGAGGGACACGCCCTCCTTGGGCGAGAAACTGCCATTGCCTTAGAAGTTTTGAAGCTGGGTCCTCAAGTTAACTCACTAAAGGTATCTACAGATGGAGCAGAAGGGGTACCAAGCATTTTTGAAAAATTTCCCGGATGTTGTGAAGGTATTGGCAAATTGAAGGATTTTCAGCTAAAAGTCCCAATTGATTCAGAGGTACAACCCATTGCACAACCAATTAGACGAGTTCCATACCACCTTCGTGATAAGCTGAGTGACAAACTGGATGAACTTGTTAAGCTAGACATAATTGAGAAAGTGAGTGGTCCAAGTTCGTGGGTATCACCAGTGGTAGTCGTACCCAAGCCCTCAGGTGACATCCGTTTGTGTGTCGATATGCGTCAAGCCAACATGGCAGTAAAGCGGGAACGTTACCCAATACCCACCATCGATGAAGTTTTACAAGATTTGAATCAGAGCAAGTTTTTCAGCAAATTGGATCTCAACTCTGCCTACCATCAGATAGAGCTGTCACCTGAATCAAGAGATATCACTACATTTTGCACACATAAGGGACTGTACCGATACAAGCGTCTCATGTTCGGTATAAGTTGTGCGCCTGAAATGTACCAGAAGGTTCTCCAGCAAGTTCTGCAAGATTGTGATGGCGCCCATAACATCCTTGATGATGTGATAGTGCATGCAGCCACTGAGGAGGAGCATGACAGAAGATTTGAGAATGTGGTCCGAGTATTGAGCAGCAAGGGGTTGACATTGAACCGCGACAAGTGTCAATTTAAGATGTCGCATTTGGAATTCATGGGCCATGTGTTGTCAGCACGTGGAATTGGTCCAGCGGATGTTAAACCGATTCTTTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q09575	Uncharacterized protein K02A2.6 OS=Caenorhabditis elegans OX=6239 GN=K02A2.6 PE=4 SV=1
P10394	Retrovirus-related Pol polyprotein from transposon 412 OS=Drosophila melanogaster OX=7227 GN=POL PE=4 SV=1
Q2F7J3	Gag-Pol polyprotein OS=Xenotropic MuLV-related virus (isolate VP35) OX=356663 GN=gag-pol PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000003 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13650 all species →	Asp_protease_2	Aspartyl protease	Domain	Interproscan
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR021109 all species →	Homologous_superfamily	Aspartic peptidase domain superfamily	Interproscan
IPR043128 all species →	Homologous_superfamily	Reverse transcriptase/Diguanylate cyclase domain	Interproscan
IPR001969 all species →	Active_site	Aspartic peptidase, active site	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR050951 all species →	Family	Retrovirus-related Pol polyprotein	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR37984 all species →	PROTEIN CBG26694	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0004190 all species →	Molecular Function	aspartic-type endopeptidase activity	Interproscan
GO:0006508 all species →	Biological Process	proteolysis	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K01885	EARS, gltX; glutamyl-tRNA synthetase	EC:6.1.1.17	Prokaryotic defense system	ko02048	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.