Gene detail

Detailed information of evm.model.Ap2.358 in Astrangia poculata

Genomic Location: Ap2:3470976...3481042
NR annotation: XP_027039762.1, uncharacterized protein LOC113668083 [Pocillopora damicornis]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.358

atggtaagcctgtggtttatatttgcagattcggttagcctagtatttgccggagaaatcaatttctcggacccagttcgctctgatgtcaagcagcacctttacagctacaaagacaccttgagtaaggtgacgcgttacatcagagaagctgacatcgcgtttggaaacctggagtctccctttgttcctaaaagagcgttatccaaaaaaaacaatagtgctaaacttattttcctggacgcagaaaagcaaagctcctcagctttaagatttgccggatttgatgtcatgacattagcaaacaaccatttgaacgactatggtgaccttcccgtgaattacacagtcgatgctctaaaagaagtcgggataaagactgtgggtgtcacacatggaccttacaattctaaccaggttccccttatcctagaaacaggggcattaaggattggagttctagcttactgtataactcagggcggcggaagatctaagaactgttcagaagtaaggaggatgttccaatctggacccgctgtttaccagaaagaaattgccacaaaagacgtaaacaatttaaagaaagtcgcgacaaagtttaatagattctttgcgaccattggcgctaaagtcgcaagtcaactaagtcgcgtcacttcggatgcttggacgaaatttgagcccgaacagcacttgaacaaagaggcatgggacttacaacgggttgaacacaaggctgttgaaaagattctgcgctcattgaaaaagaataaggctgccggtctagataaaatccctgcgagattgttgagagatgctggcgaggaattagttccctcaatatcctatttagtcaacaaatcactaaccgatggaaaagttcccgctctgtggaaaatggcgcgcgttactcctttatacaaaaatgatgataaactgcaagttcaaaactatcgcccaatctccgtgctaccagccattagcaaagttattgaaagagtggtgcacgctcagctaagtctttatctagataagctaggctacctgtataaacatcagtatgggttcaggcgtggccacagcactcagcaagcaatcgctcaaataaataactgggtattggaatctatggacagtggggaggtcacgggtttactgtttctcgatatctcgaaagcatttgactcgttaaaccacaaagttctcctgggcaagttggagtctattggattgtcttcgaaatcagtgagctggtttaggtcataccttgttggaaggcggcaatgcgtgttgatcaatgttttgcctcatttcgactatggtgacgttgtctggggcgatcaacctggtttgaaatccgatatggatcgcttacaagcctttcagaacaggtttgctaaaagaattatgggaaacaaaatgtcatcaaatgaagctctcgaacatctcaaatggattccgctagctggtcgacgctttggacaccgctgctgtgctgtacaaaacgctattaaaggggacattccagaaaatgttaacatcttcaaaacgaccatgaacgattcacacggctacagcacaagaaacagctatctgcccagactcccaaaaataagaactgactggggaaagagagtcaccagctacaaatgtacgatcgattggtcatctttacccgatgaaaaggccgtggacgtgatcgttgttctggcgcactggggccgacaatacactcctcgaatgaacaaccttcaaaaacaagtcgctcaccatctgacgtcactcggtgttcaactcatcattggttgccatccccacgtggaacaaccttacagttaccacggcaaccgatttgttgcatacagtttaggaaatctggtgttcttacattcaatgactccagaaaagtatacgcatccaacattttcgctcaacgccaccagacacggacgccttattcgcgccgaagtttcgagacgaggggtgacaagagctcaatatctgccttatgaaatcagagtcaatcaaactaaccactgcatccaaccaacaccactgagtaacgccgcatggattgacgtatgtggacagacagacactgcctgcttaaaagacattgacgacacatgtcatttgtga

Transcript

evm.model.Ap2.358

ATGGTAAGCCTGTGGTTTATATTTGCAGATTCGGTTAGCCTAGTATTTGCCGGAGAAATCAATTTCTCGGACCCAGTTCGCTCTGATGTCAAGCAGCACCTTTACAGCTACAAAGACACCTTGAGTAAGGTGACGCGTTACATCAGAGAAGCTGACATCGCGTTTGGAAACCTGGAGTCTCCCTTTGTTCCTAAAAGAGCGTTATCCAAAAAAAACAATAGTGCTAAACTTATTTTCCTGGACGCAGAAAAGCAAAGCTCCTCAGCTTTAAGATTTGCCGGATTTGATGTCATGACATTAGCAAACAACCATTTGAACGACTATGGTGACCTTCCCGTGAATTACACAGTCGATGCTCTAAAAGAAGTCGGGATAAAGACTGTGGGTGTCACACATGGACCTTACAATTCTAACCAGGTTCCCCTTATCCTAGAAACAGGGGCATTAAGGATTGGAGTTCTAGCTTACTGTATAACTCAGGGCGGCGGAAGATCTAAGAACTGTTCAGAAGTAAGGAGGATGTTCCAATCTGGACCCGCTGTTTACCAGAAAGAAATTGCCACAAAAGACGTAAACAATTTAAAGAAAGTCGCGACAAAGTTTAATAGATTCTTTGCGACCATTGGCGCTAAAGTCGCAAGTCAACTAAGTCGCGTCACTTCGGATGCTTGGACGAAATTTGAGCCCGAACAGCACTTGAACAAAGAGGCATGGGACTTACAACGGGTTGAACACAAGGCTGTTGAAAAGATTCTGCGCTCATTGAAAAAGAATAAGGCTGCCGGTCTAGATAAAATCCCTGCGAGATTGTTGAGAGATGCTGGCGAGGAATTAGTTCCCTCAATATCCTATTTAGTCAACAAATCACTAACCGATGGAAAAGTTCCCGCTCTGTGGAAAATGGCGCGCGTTACTCCTTTATACAAAAATGATGATAAACTGCAAGTTCAAAACTATCGCCCAATCTCCGTGCTACCAGCCATTAGCAAAGTTATTGAAAGAGTGGTGCACGCTCAGCTAAGTCTTTATCTAGATAAGCTAGGCTACCTGTATAAACATCAGTATGGGTTCAGGCGTGGCCACAGCACTCAGCAAGCAATCGCTCAAATAAATAACTGGGTATTGGAATCTATGGACAGTGGGGAGGTCACGGGTTTACTGTTTCTCGATATCTCGAAAGCATTTGACTCGTTAAACCACAAAGTTCTCCTGGGCAAGTTGGAGTCTATTGGATTGTCTTCGAAATCAGTGAGCTGGTTTAGGTCATACCTTGTTGGAAGGCGGCAATGCGTGTTGATCAATGTTTTGCCTCATTTCGACTATGGTGACGTTGTCTGGGGCGATCAACCTGGTTTGAAATCCGATATGGATCGCTTACAAGCCTTTCAGAACAGGTTTGCTAAAAGAATTATGGGAAACAAAATGTCATCAAATGAAGCTCTCGAACATCTCAAATGGATTCCGCTAGCTGGTCGACGCTTTGGACACCGCTGCTGTGCTGTACAAAACGCTATTAAAGGGGACATTCCAGAAAATGTTAACATCTTCAAAACGACCATGAACGATTCACACGGCTACAGCACAAGAAACAGCTATCTGCCCAGACTCCCAAAAATAAGAACTGACTGGGGAAAGAGAGTCACCAGCTACAAATGTACGATCGATTGGTCATCTTTACCCGATGAAAAGGCCGTGGACGTGATCGTTGTTCTGGCGCACTGGGGCCGACAATACACTCCTCGAATGAACAACCTTCAAAAACAAGTCGCTCACCATCTGACGTCACTCGGTGTTCAACTCATCATTGGTTGCCATCCCCACGTGGAACAACCTTACAGTTACCACGGCAACCGATTTGTTGCATACAGTTTAGGAAATCTGGTGTTCTTACATTCAATGACTCCAGAAAAGTATACGCATCCAACATTTTCGCTCAACGCCACCAGACACGGACGCCTTATTCGCGCCGAAGTTTCGAGACGAGGGGTGACAAGAGCTCAATATCTGCCTTATGAAATCAGAGTCAATCAAACTAACCACTGCATCCAACCAACACCACTGAGTAACGCCGCATGGATTGACGTATGTGGACAGACAGACACTGCCTGCTTAAAAGACATTGACGACACATGTCATTTGTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
Q9NBX4	Probable RNA-directed DNA polymerase from transposon X-element OS=Drosophila melanogaster OX=7227 GN=X-elementORF2 PE=3 SV=1
P21329	RNA-directed DNA polymerase from mobile element jockey OS=Drosophila funebris OX=7221 GN=jockeypol PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0000705 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF00078 all species →	RVT_1	Reverse transcriptase (RNA-dependent DNA polymerase)	Domain	Interproscan
PF09587 all species →	PGA_cap	Bacterial capsule synthesis protein PGA_cap	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR029052 all species →	Homologous_superfamily	Metallo-dependent phosphatase-like	Interproscan
IPR000477 all species →	Domain	Reverse transcriptase domain	Interproscan
IPR043502 all species →	Homologous_superfamily	DNA/RNA polymerase superfamily	Interproscan
IPR052169 all species →	Family	Cell Wall Biosynthesis Accessory Protein	Interproscan
IPR019079 all species →	Domain	Capsule synthesis protein, CapA	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR33393 all species →	POLYGLUTAMINE SYNTHESIS ACCESSORY PROTEIN RV0574C-RELATED	Interproscan

Gene Ontology

No Gene Ontology signature was detected for evm.model.Ap2.358. This gene does have a gene model — the search simply returned no hit.

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.358.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.