Gene detail

Detailed information of evm.model.Ap2.3598 in Astrangia poculata

Genomic Location: Ap2:36852153...36865152
NR annotation: XP_020616190.1, alpha-dioxygenase 2-like [Orbicella faveolata]
Species Astrangia poculata · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.3598

atggatcccgggcttctgcaccttttaggactgatcaaaggttacctgttgagaggtcacgtgtggtggcacatgccgctcgtgctgacgatggcttacacgctgtttgtaagagaaagattactggatcacgctctgtttgattcgtatcccaatccactgccgcaggtcaaacaacgctgcaatgacccagtgttaggggaaggatacataggctgcattaaagcatctatgctggacgattacggattcgatgaacaggttttagcttcagtgactcccgaggaatgcattgccaagtgtaaaactaacatgttttcatatgcagctttacacaaagggaccagatgtcactgtggaatggattatgaattagaagcgttggccaaagactgtaaatgtcgaagaaagtgtaaaggaaacaagaagaaacgatgtggggacacgaactacgcttccctctacaatacgtacttttgcacagagagaatgaaagcagctcgtaccatcgatggaacgtgtaacgacctcaacaattctgctgctggaagcaggttttaccggtttggcaggaacgttcctcttaaatatacctacagtgaccaagcacgtctccttcaacccaatccacgaatgctagcaaaaaaattgttacagcgtaagaattttcttgaggtcccctggttgaatctgtttgcagtggcgtgggtccagtttatggtacatgactggtttgatcacggtacaccaatcaaggagaacaagatcaaagttcctcttcaacgggacgatccactgcattctaaaatgaagggttttatgaaaattctccgtaccaaaccagacacgtgttcaactggcgacacctaccaaaatgacgtcacacactggtgggacggctcacagctgtatggcagtgacaaagaaacgcatgcgcttgttcgctcctttgttaacggtaaactgcaagttgatgatgacggcttactgcctgtggatccaaagaccaacatcgacatcactggtttctccaaaaactggtgggttggattaagcattcttcacaaccttttcacaagagaacacaacttaatctgcgacatgctgctgaagaatcaccctgactggacagatgataagctctttcaaacagcaaggctcatcaatacagctcagatagtgcaaattcacacactggaatggactgctgcaatactgaacacggacttcattcacgaatcgctgataggacagtggtatggcaagcttagtacacgggtcgtcaagctattgaaagacatgaatattagcttaggagaaaatagctttccctcacatatagggaacccgccggactatagaggggttcctttctctctgactgaggaattcgtgtctgtgtacagaatgcattccttgttaccagataccattgccatacgtcaaatgaatacaggcctttacagtggaaaggggtatagccttcccaaattttctttcgaaaatgctcgtagtgtgtttgacgacaacgatctggaggacatcctgtatacatttggagtagagaagtcaggacagctcgtgttacataactaccccacaacattgatggagcttaagatcccaaaacaccagaaaggaggacggcttcttgacctggcaacgattgacattttaagagaccgcgagagaggggtcccacggtacaaccagttccgacgattgctgaacttgacaacaccagatacatttgagaaactcactaatgacacggtgactgctgcggaactcagacaggcgtataacgacaacattgaagacgttgaccttctgattggctctctggccgaggcgcgtcctgaagggtttgggttcggggatactccctttcaccttttcctatgtatggcaaaccgccgtctgaggactgacagatttttgaccattgattacaaagaagagtattacactaaagaaggactggattgggttgaaaactccaccatgaagaaaatactgctacgaaactttcctgaagtagccggtctgagcagctctatgcaaaatattaaaaacgccttttatttatggaataaataa

Transcript

evm.model.Ap2.3598

ATGGATCCCGGGCTTCTGCACCTTTTAGGACTGATCAAAGGTTACCTGTTGAGAGGTCACGTGTGGTGGCACATGCCGCTCGTGCTGACGATGGCTTACACGCTGTTTGTAAGAGAAAGATTACTGGATCACGCTCTGTTTGATTCGTATCCCAATCCACTGCCGCAGGTCAAACAACGCTGCAATGACCCAGTGTTAGGGGAAGGATACATAGGCTGCATTAAAGCATCTATGCTGGACGATTACGGATTCGATGAACAGGTTTTAGCTTCAGTGACTCCCGAGGAATGCATTGCCAAGTGTAAAACTAACATGTTTTCATATGCAGCTTTACACAAAGGGACCAGATGTCACTGTGGAATGGATTATGAATTAGAAGCGTTGGCCAAAGACTGTAAATGTCGAAGAAAGTGTAAAGGAAACAAGAAGAAACGATGTGGGGACACGAACTACGCTTCCCTCTACAATACGTACTTTTGCACAGAGAGAATGAAAGCAGCTCGTACCATCGATGGAACGTGTAACGACCTCAACAATTCTGCTGCTGGAAGCAGGTTTTACCGGTTTGGCAGGAACGTTCCTCTTAAATATACCTACAGTGACCAAGCACGTCTCCTTCAACCCAATCCACGAATGCTAGCAAAAAAATTGTTACAGCGTAAGAATTTTCTTGAGGTCCCCTGGTTGAATCTGTTTGCAGTGGCGTGGGTCCAGTTTATGGTACATGACTGGTTTGATCACGGTACACCAATCAAGGAGAACAAGATCAAAGTTCCTCTTCAACGGGACGATCCACTGCATTCTAAAATGAAGGGTTTTATGAAAATTCTCCGTACCAAACCAGACACGTGTTCAACTGGCGACACCTACCAAAATGACGTCACACACTGGTGGGACGGCTCACAGCTGTATGGCAGTGACAAAGAAACGCATGCGCTTGTTCGCTCCTTTGTTAACGGTAAACTGCAAGTTGATGATGACGGCTTACTGCCTGTGGATCCAAAGACCAACATCGACATCACTGGTTTCTCCAAAAACTGGTGGGTTGGATTAAGCATTCTTCACAACCTTTTCACAAGAGAACACAACTTAATCTGCGACATGCTGCTGAAGAATCACCCTGACTGGACAGATGATAAGCTCTTTCAAACAGCAAGGCTCATCAATACAGCTCAGATAGTGCAAATTCACACACTGGAATGGACTGCTGCAATACTGAACACGGACTTCATTCACGAATCGCTGATAGGACAGTGGTATGGCAAGCTTAGTACACGGGTCGTCAAGCTATTGAAAGACATGAATATTAGCTTAGGAGAAAATAGCTTTCCCTCACATATAGGGAACCCGCCGGACTATAGAGGGGTTCCTTTCTCTCTGACTGAGGAATTCGTGTCTGTGTACAGAATGCATTCCTTGTTACCAGATACCATTGCCATACGTCAAATGAATACAGGCCTTTACAGTGGAAAGGGGTATAGCCTTCCCAAATTTTCTTTCGAAAATGCTCGTAGTGTGTTTGACGACAACGATCTGGAGGACATCCTGTATACATTTGGAGTAGAGAAGTCAGGACAGCTCGTGTTACATAACTACCCCACAACATTGATGGAGCTTAAGATCCCAAAACACCAGAAAGGAGGACGGCTTCTTGACCTGGCAACGATTGACATTTTAAGAGACCGCGAGAGAGGGGTCCCACGGTACAACCAGTTCCGACGATTGCTGAACTTGACAACACCAGATACATTTGAGAAACTCACTAATGACACGGTGACTGCTGCGGAACTCAGACAGGCGTATAACGACAACATTGAAGACGTTGACCTTCTGATTGGCTCTCTGGCCGAGGCGCGTCCTGAAGGGTTTGGGTTCGGGGATACTCCCTTTCACCTTTTCCTATGTATGGCAAACCGCCGTCTGAGGACTGACAGATTTTTGACCATTGATTACAAAGAAGAGTATTACACTAAAGAAGGACTGGATTGGGTTGAAAACTCCACCATGAAGAAAATACTGCTACGAAACTTTCCTGAAGTAGCCGGTCTGAGCAGCTCTATGCAAAATATTAAAAACGCCTTTTATTTATGGAATAAATAA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
A0A2G3AC72	Alpha-dioxygenase 1 OS=Capsicum annuum OX=4072 GN=T459_06886 PE=2 SV=1
Q9C9U3	Alpha-dioxygenase 2 OS=Arabidopsis thaliana OX=3702 GN=DOX2 PE=2 SV=1
A0A1S3ZX38	Alpha-dioxygenase PIOX OS=Nicotiana tabacum OX=4097 GN=PIOX PE=1 SV=1

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0002459 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF01822 all species →	WSC	WSC domain	Domain	Interproscan
PF03098 all species →	An_peroxidase	Animal haem peroxidase	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR019791 all species →	Family	Haem peroxidase, animal-type	Interproscan
IPR002889 all species →	Domain	Carbohydrate-binding WSC	Interproscan
IPR034815 all species →	Family	Alpha-dioxygenase	Interproscan
IPR050783 all species →	Family	Oxylipin biosynthesis and metabolism	Interproscan
IPR010255 all species →	Homologous_superfamily	Haem peroxidase superfamily	Interproscan
IPR037120 all species →	Homologous_superfamily	Haem peroxidase domain superfamily, animal type	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR11903 all species →	PROSTAGLANDIN G/H SYNTHASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0016491 all species →	Molecular Function	oxidoreductase activity	Interproscan
GO:0004666 all species →	Molecular Function	prostaglandin-endoperoxide synthase activity	Interproscan
GO:0005737 all species →	Cellular Component	cytoplasm	Interproscan
GO:0016702 all species →	Molecular Function	oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen	Interproscan
GO:0019371 all species →	Biological Process	cyclooxygenase pathway	Interproscan
GO:0043005 all species →	Cellular Component	neuron projection	Interproscan
GO:0004601 all species →	Molecular Function	peroxidase activity	Interproscan
GO:0006979 all species →	Biological Process	response to oxidative stress	Interproscan
GO:0020037 all species →	Molecular Function	heme binding	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

KO	Enzyme	Enzyme ID	Pathway	Map ID	Source
K19511	PXDN, VPO1; peroxidase	EC:1.11.1.7	Enzymes with EC numbers	-	deepkoala

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.