Detailed information of evm.model.Ap2.368 in Astrangia poculata

Genomic Location: Ap2:3546176...3558495
NR annotation: CAH3128826.1, unnamed protein product [Pocillopora meandrina]
Species abbreviation APOCU · all data for this species · gene families


 Gene Structure
More details in JBrowse  Sequence
CDS
Transcript
Protein
 UniProt (Swiss-Prot top hit)
No Swiss-Prot hit above the reporting threshold for this gene.
 Gene family
Family typeMembership / link
Orthogroup (gene family)OG0004293 (this species only)
Transcription factor familyCSD · all TF in this species

 Pfam domain
Pfam accessionPfam nameDescriptionTypeSource
PF04326
all species →
SLFN_AlbA_2Schlafen, AlbA_2DomainInterproscan
PF00313
all species →
CSD'Cold-shock' DNA-binding domainDomainInterproscan

 InterPro
InterPro termTypeDescriptionSource
IPR007421
all species →
DomainSchlafen, AlbA_2 domainInterproscan
IPR013761
all species →
Homologous_superfamilySterile alpha motif/pointed domain superfamilyInterproscan
IPR003118
all species →
DomainPointed domainInterproscan
IPR012340
all species →
Homologous_superfamilyNucleic acid-binding, OB-foldInterproscan
IPR002059
all species →
DomainCold-shock protein, DNA-bindingInterproscan
IPR011129
all species →
DomainCold shock domainInterproscan
IPR038461
all species →
Homologous_superfamilySchlafen, AlbA_2 domain superfamilyInterproscan

 PANTHER
PANTHER termDescriptionSource
PTHR16155
all species →
DED DOMAIN-CONTAINING PROTEINInterproscan

 Gene Ontology
GO termCategoryDescriptionSource
GO:0043565
all species →
Molecular Functionsequence-specific DNA bindingInterproscan
GO:0003676
all species →
Molecular Functionnucleic acid bindingInterproscan
GO:0005737
all species →
Cellular ComponentcytoplasmInterproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.
 KEGG pathway
No KEGG orthology assignment for evm.model.Ap2.368.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.
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