Gene detail

Detailed information of evm.model.Ap2.3684 in Astrangia poculata

Genomic Location: Ap2:37607499...37621384
NR annotation: XP_020616218.1, maltase-glucoamylase, intestinal-like [Orbicella faveolata]
Species abbreviation APOCU · all data for this species · gene families

Gene Structure

More details in JBrowse

Sequence

CDS

evm.model.Ap2.3684

atggcgtccttccacaaacaacctctattgctcgtttttctaagtgtttttctactggccccagccattgctgatcatgtcacagatcaggacaaaatcgactgctacccagaaggtggaaaccagactctttgtgagtctcgaggatgcacatgggagaaatcacgcacaaagggcgttccttggtgcttttttccaaagtcatatggtggtggataccagattgatggagatgtgcgagaaacacagcttggttaccaagcgacactaaaacgacgctctgttggtattaccatatatgggaatgatataaatgtcctcacacttgacgtcgaatttcagacaaacgaccgcgtcagatttaagctgtacgactccaaaaataagagatacgaggtaccagtacccatgccaaaggcgacgtcaaaggcttcgaacccaaagtacaagactgagttccaaaagaatcctttctccttaaaaatactgcgaaaagataacggagctgtattatgggactcgtctgttggtccgttcatatttgaagaccagttcatacagatctcgaaccagcctccctcgtcatttgtgtacggttttggtgaacaggagcataggtcgtttaaacataacctgtcggcctgggaggtgctaccgatcttcacaagagaccagtttccatttaatggcgggaatttgtatggtcaccatccattctacacgtgtatggagagcgatggcaaagctcatggagtttttctaatgaacagtaacgcgatggatgtcgccctgcaaccaaagccagccataacgtatcgcacaattggtggaattcttgacttctacattttccttggcccttcccccgaggacgtcgtcaaacagtatactgaggctattggtcgtacatttttgccgccatattggtcgttgggattccagctatcacgttggggatataacaagattgagacggtgaagggcctggtggagagcatgcgcaaatatgatcttccacaggatgtgcagtttggcgatatcgactacatgatccgacagaaagacttcacttatgatcctgtgaacttcacaggcttgccagagtttgttcgctccatcaaaaaagacggcttgcgttacatcataatactggaccccgctatcggagccaatgacactaattatcgtccttacgactggggaaacgaactgaatgtgttcatcaaagatggcgactctgctaacaatgagaacctgtttggaaaggtgtggccgacactggaaaatgtcatcgtgaacaacagcttgccttgggatgaaataacaaggctgtaccgtcaatacgccacatttccagactattttcacccaaacatcagtaaatactggatagatctcattaaggactttcacaagatcatcgaatttgacggattatggatcgacatgaacgagcctgccaactttgttcctgggagtgtgagtggatgcagcaacaacaaatgggactatcctccttacaagccgaggattgttggaagcatcatggcggataagaccgtgtgtatgaatgcaaaacaattcggcaatctacactatgatgttcacagcttgtacggctggagtcagacattggtcacactggatgctgcaaggcaaagcacagggaaaaggagtctcgtgatttcaagatcaacttttgccagcagcggaaagtatgctgggcattggctgggtgacaataaggcatcatgggaccaacttcacccgtcaatcattggtatgctcgagttcaacctttttggcattccttacattggagcagatgtttgcggtttctttgaacatccgaccagtgagatgtgcctgcgatggactcaactcggagcattttatcctttcttccgaaaccacaatggatttggaaacgcggcgcaagaccccacggcctttgacgaagactttgccaacaaggcgcgtaaagcattacagacacgttacaagttgctgccattcctgtacacgttgttttatgaggcgcaaatagatggctcaacagtggtacgacctgttatgcatgagttctcggatgacaagaacacgtgggaaattgaccggcagtttctctggggagcatctttgcttatttcacctgtattagataagggcaagacgactgttaatgcgtacttccctgacgaccggtggtttgactattacacgggtaagaagatgagcacacgtaagggtcgcgtgactttagacgctcctcttgaccacattcctctccatgtacgaggaggtcacattatcccaacccaggaacccgccaacaacactgctttcagtcgaaagaagccgatgggtgtgattatagcgcttggagacgatggggaagcttcaggccagctcttctgggatgatggagaatccattgacaccgtgaaaaatgacaaatacctactggtaaagttctcgggttccaagactgggctgaaattctccatcgcgaagaaaggttacacgtccgcagatcttcctaaatggggctcggtagcagtgtacggacttgatggagacgatatcgattccttgagtgtcaatggagacgatatgcaggataaagccagctatgacaaggacaccaaggtcttgaaaatcactgatctctcactaaacatcaaagacgaacaccagatcgaatggaccgtgtctcagccaaagggggctggaaaccaaatacattcttatgtcgccgctgcctttctcccgctgctggctcttgctgtagcattcatttag

Transcript

evm.model.Ap2.3684

ATGGCGTCCTTCCACAAACAACCTCTATTGCTCGTTTTTCTAAGTGTTTTTCTACTGGCCCCAGCCATTGCTGATCATGTCACAGATCAGGACAAAATCGACTGCTACCCAGAAGGTGGAAACCAGACTCTTTGTGAGTCTCGAGGATGCACATGGGAGAAATCACGCACAAAGGGCGTTCCTTGGTGCTTTTTTCCAAAGTCATATGGTGGTGGATACCAGATTGATGGAGATGTGCGAGAAACACAGCTTGGTTACCAAGCGACACTAAAACGACGCTCTGTTGGTATTACCATATATGGGAATGATATAAATGTCCTCACACTTGACGTCGAATTTCAGACAAACGACCGCGTCAGATTTAAGCTGTACGACTCCAAAAATAAGAGATACGAGGTACCAGTACCCATGCCAAAGGCGACGTCAAAGGCTTCGAACCCAAAGTACAAGACTGAGTTCCAAAAGAATCCTTTCTCCTTAAAAATACTGCGAAAAGATAACGGAGCTGTATTATGGGACTCGTCTGTTGGTCCGTTCATATTTGAAGACCAGTTCATACAGATCTCGAACCAGCCTCCCTCGTCATTTGTGTACGGTTTTGGTGAACAGGAGCATAGGTCGTTTAAACATAACCTGTCGGCCTGGGAGGTGCTACCGATCTTCACAAGAGACCAGTTTCCATTTAATGGCGGGAATTTGTATGGTCACCATCCATTCTACACGTGTATGGAGAGCGATGGCAAAGCTCATGGAGTTTTTCTAATGAACAGTAACGCGATGGATGTCGCCCTGCAACCAAAGCCAGCCATAACGTATCGCACAATTGGTGGAATTCTTGACTTCTACATTTTCCTTGGCCCTTCCCCCGAGGACGTCGTCAAACAGTATACTGAGGCTATTGGTCGTACATTTTTGCCGCCATATTGGTCGTTGGGATTCCAGCTATCACGTTGGGGATATAACAAGATTGAGACGGTGAAGGGCCTGGTGGAGAGCATGCGCAAATATGATCTTCCACAGGATGTGCAGTTTGGCGATATCGACTACATGATCCGACAGAAAGACTTCACTTATGATCCTGTGAACTTCACAGGCTTGCCAGAGTTTGTTCGCTCCATCAAAAAAGACGGCTTGCGTTACATCATAATACTGGACCCCGCTATCGGAGCCAATGACACTAATTATCGTCCTTACGACTGGGGAAACGAACTGAATGTGTTCATCAAAGATGGCGACTCTGCTAACAATGAGAACCTGTTTGGAAAGGTGTGGCCGACACTGGAAAATGTCATCGTGAACAACAGCTTGCCTTGGGATGAAATAACAAGGCTGTACCGTCAATACGCCACATTTCCAGACTATTTTCACCCAAACATCAGTAAATACTGGATAGATCTCATTAAGGACTTTCACAAGATCATCGAATTTGACGGATTATGGATCGACATGAACGAGCCTGCCAACTTTGTTCCTGGGAGTGTGAGTGGATGCAGCAACAACAAATGGGACTATCCTCCTTACAAGCCGAGGATTGTTGGAAGCATCATGGCGGATAAGACCGTGTGTATGAATGCAAAACAATTCGGCAATCTACACTATGATGTTCACAGCTTGTACGGCTGGAGTCAGACATTGGTCACACTGGATGCTGCAAGGCAAAGCACAGGGAAAAGGAGTCTCGTGATTTCAAGATCAACTTTTGCCAGCAGCGGAAAGTATGCTGGGCATTGGCTGGGTGACAATAAGGCATCATGGGACCAACTTCACCCGTCAATCATTGGTATGCTCGAGTTCAACCTTTTTGGCATTCCTTACATTGGAGCAGATGTTTGCGGTTTCTTTGAACATCCGACCAGTGAGATGTGCCTGCGATGGACTCAACTCGGAGCATTTTATCCTTTCTTCCGAAACCACAATGGATTTGGAAACGCGGCGCAAGACCCCACGGCCTTTGACGAAGACTTTGCCAACAAGGCGCGTAAAGCATTACAGACACGTTACAAGTTGCTGCCATTCCTGTACACGTTGTTTTATGAGGCGCAAATAGATGGCTCAACAGTGGTACGACCTGTTATGCATGAGTTCTCGGATGACAAGAACACGTGGGAAATTGACCGGCAGTTTCTCTGGGGAGCATCTTTGCTTATTTCACCTGTATTAGATAAGGGCAAGACGACTGTTAATGCGTACTTCCCTGACGACCGGTGGTTTGACTATTACACGGGTAAGAAGATGAGCACACGTAAGGGTCGCGTGACTTTAGACGCTCCTCTTGACCACATTCCTCTCCATGTACGAGGAGGTCACATTATCCCAACCCAGGAACCCGCCAACAACACTGCTTTCAGTCGAAAGAAGCCGATGGGTGTGATTATAGCGCTTGGAGACGATGGGGAAGCTTCAGGCCAGCTCTTCTGGGATGATGGAGAATCCATTGACACCGTGAAAAATGACAAATACCTACTGGTAAAGTTCTCGGGTTCCAAGACTGGGCTGAAATTCTCCATCGCGAAGAAAGGTTACACGTCCGCAGATCTTCCTAAATGGGGCTCGGTAGCAGTGTACGGACTTGATGGAGACGATATCGATTCCTTGAGTGTCAATGGAGACGATATGCAGGATAAAGCCAGCTATGACAAGGACACCAAGGTCTTGAAAATCACTGATCTCTCACTAAACATCAAAGACGAACACCAGATCGAATGGACCGTGTCTCAGCCAAAGGGGGCTGGAAACCAAATACATTCTTATGTCGCCGCTGCCTTTCTCCCGCTGCTGGCTCTTGCTGTAGCATTCATTTAGTACTGA

Protein

UniProt (Swiss-Prot top hit)

UniProt accession	Description
O43451	Maltase-glucoamylase OS=Homo sapiens OX=9606 GN=MGAM PE=1 SV=6
P07768	Sucrase-isomaltase, intestinal OS=Oryctolagus cuniculus OX=9986 GN=SI PE=1 SV=3
P14410	Sucrase-isomaltase, intestinal OS=Homo sapiens OX=9606 GN=SI PE=1 SV=6

Gene family

Family type	Membership / link
Orthogroup (gene family)	OG0001411 (this species only)

Pfam domain

Pfam accession	Pfam name	Description	Type	Source
PF13802 all species →	Gal_mutarotas_2	Glycosyl hydrolase 31 N-terminal galactose mutarotase-like domain	Domain	Interproscan
PF00088 all species →	Trefoil	Trefoil (P-type) domain	Domain	Interproscan
PF21365 all species →	Glyco_hydro_31_3rd	Glycosyl hydrolase family 31 C-terminal domain	Domain	Interproscan
PF01055 all species →	Glyco_hydro_31_2nd	Glycosyl hydrolases family 31 TIM-barrel domain	Domain	Interproscan

InterPro

InterPro term	Type	Description	Source
IPR017853 all species →	Homologous_superfamily	Glycoside hydrolase superfamily	Interproscan
IPR000519 all species →	Domain	P-type trefoil domain	Interproscan
IPR025887 all species →	Domain	Glycoside hydrolase family 31, N-terminal domain	Interproscan
IPR011013 all species →	Homologous_superfamily	Galactose mutarotase-like domain superfamily	Interproscan
IPR044913 all species →	Homologous_superfamily	P-type trefoil domain superfamily	Interproscan
IPR013780 all species →	Homologous_superfamily	Glycosyl hydrolase, all-beta	Interproscan
IPR030458 all species →	Active_site	Glycosyl hydrolases family 31, active site	Interproscan
IPR048395 all species →	Domain	Glycosyl hydrolase family 31, C-terminal domain	Interproscan
IPR000322 all species →	Domain	Glycoside hydrolase family 31, TIM barrel domain	Interproscan

PANTHER

PANTHER term	Description	Source
PTHR22762 all species →	ALPHA-GLUCOSIDASE	Interproscan

Gene Ontology

GO term	Category	Description	Source
GO:0003824 all species →	Molecular Function	catalytic activity	Interproscan
GO:0005975 all species →	Biological Process	carbohydrate metabolic process	Interproscan
GO:0030246 all species →	Molecular Function	carbohydrate binding	Interproscan
GO:0004553 all species →	Molecular Function	hydrolase activity, hydrolyzing O-glycosyl compounds	Interproscan
GO:0004558 all species →	Molecular Function	alpha-1,4-glucosidase activity	Interproscan

Search by domain instead of by gene. Any accession above (InterPro, Pfam, PANTHER, GO, KEGG) can be used as a query on the Functional Domain Search page, which searches all 148 annotated genomes at once.

KEGG pathway

No KEGG orthology assignment for evm.model.Ap2.3684.

Searching by KO or pathway ID across all species is available on the KEGG Pathway page.